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Aliases : LOC_Os02g16640
Description : component U1C of U1 small nuclear ribonucleoprotein particle (snRNP)
Gene families : OG0002867 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002867_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT4G03120 | No alias | C2H2 and C2HC zinc fingers superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.09G042200.1 | Ceric.09G042200 | component *(U1C) of U1 snRNP complex & original... | 0.03 | OrthoFinder output from all 47 species | |
| Cre09.g401300 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.01 | OrthoFinder output from all 47 species | |
| Mp4g05150.1 | No alias | component U1C of U1 small nuclear ribonucleoprotein... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc06g008860.3.1 | Solyc06g008860 | component U1C of U1 small nuclear ribonucleoprotein... | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003712 | transcription coregulator activity | IEP | HCCA |
| MF | GO:0003743 | translation initiation factor activity | IEP | HCCA |
| BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | HCCA |
| BP | GO:0006413 | translational initiation | IEP | HCCA |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | HCCA |
| CC | GO:0016592 | mediator complex | IEP | HCCA |
| MF | GO:0045182 | translation regulator activity | IEP | HCCA |
| MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR013085 | U1-CZ_Znf_C2H2 | 1 | 38 |
| No external refs found! |