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  5. LOC_Os02g09920.1

LOC_Os02g09920.1 (ATMBD9, MBD9, LOC_Os02g09920)


Aliases : ATMBD9, MBD9, LOC_Os02g09920

Description : Methyl-CpG-binding domain-containing protein 9 OS=Arabidopsis thaliana (sp|q9sgh2|mbd9_arath : 545.0)


Gene families : OG0006711 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006711_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g09920.1
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
AT3G01460 ATMBD9, MBD9 methyl-CPG-binding domain 9 0.04 OrthoFinder output from all 47 species
Ppi_g08937 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.02 OrthoFinder output from all 47 species
Sam_g18047 No alias component *(MBD9) of SWR1 chromatin remodeling complex &... 0.02 OrthoFinder output from all 47 species
Solyc05g005640.4.1 ATMBD9, MBD9,... Methyl-CpG-binding domain-containing protein 9... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001487 Bromodomain 2 52
IPR019787 Znf_PHD-finger 110 156
IPR028942 WHIM1_dom 189 232
No external refs found!