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  5. LOC_Os02g07190.1

LOC_Os02g07190.1 (LOC_Os02g07190)


Aliases : LOC_Os02g07190

Description : Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus (sp|c6l7u1|lin1_lotja : 219.0)


Gene families : OG0002525 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002525_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g07190.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00231470 evm_27.TU.AmTr_v1... Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus 0.03 OrthoFinder output from all 47 species
Adi_g001214 No alias ubiquitin E3 ligase *(CERBERUS/LIN) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g087043 No alias ubiquitin E3 ligase *(CERBERUS/LIN) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g19831 PUB26 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g21868 No alias ubiquitin E3 ligase *(CERBERUS/LIN) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01035145001 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus 0.03 OrthoFinder output from all 47 species
Len_g45207 PUB26 ubiquitin E3 ligase *(CERBERUS/LIN) & original description: none 0.02 OrthoFinder output from all 47 species
MA_1171557g0010 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.02 OrthoFinder output from all 47 species
MA_126120g0010 No alias Putative E3 ubiquitin-protein ligase LIN OS=Medicago... 0.03 OrthoFinder output from all 47 species
MA_15009g0010 PUB26 Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus... 0.05 OrthoFinder output from all 47 species
MA_394030g0010 ATTOC120, TOC120 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_87817g0010 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.02 OrthoFinder output from all 47 species
Pir_g19454 No alias ubiquitin E3 ligase *(CERBERUS/LIN) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g006380.2.1 Solyc01g006380 Putative E3 ubiquitin-protein ligase LIN OS=Medicago... 0.04 OrthoFinder output from all 47 species
Solyc01g066740.3.1 Solyc01g066740 Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.04 OrthoFinder output from all 47 species
Tin_g21317 No alias ubiquiTin E3 ligase *(CERBERUS/LIN) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e016398_P001 Zm00001e016398 ubiquitin E3 ligase (CERBERUS/LIN) 0.04 OrthoFinder output from all 47 species
Zm00001e031427_P002 Zm00001e031427 Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0042221 response to chemical IEP HCCA

No InterPro domains available for this sequence

No external refs found!