LOC_Os08g05840 (Os08g0154600)


Aliases : Os08g0154600

Description : No description available


Gene families : OG_01_0004918 (Gene family) Phylogenetic Tree(s): OG0004918_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os08g05840
Cluster HCCA cluster: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AT5G55300 MGO1, TOP1, TOP1ALPHA DNA topoisomerase I alpha 0.08 Gene family
Cre03.g178600 No alias No description available 0.02 Gene family
GSVIVT01020301001 No alias 28.1 DNA.synthesis/chromatin structure Encodes a type-I... 0.03 Gene family
MA_120434g0010 No alias 28.1 DNA.synthesis/chromatin structure Encodes a type-I... 0.05 Gene family
Smo109207 PACid_15402587 No description available 0.03 Gene family
Smo145504 PACid_15421954 No description available 0.04 Gene family
Smo152781 PACid_15422049 No description available 0.02 Gene family
Solyc07g049720.3.1 Solyc07g049720.3 No description available 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan
MF GO:0003917 DNA topoisomerase type I activity IEA InterProScan
CC GO:0005694 chromosome IEA InterProScan
BP GO:0006265 DNA topological change IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR013500 TopoI_cat_euk 587 812
IPR008336 TopoI_DNA-bd_euk 373 584
IPR025834 TopoI_C_dom 848 916
No external refs found!