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  5. LOC_Os01g74030.1

LOC_Os01g74030.1 (PUM1, APUM1, LOC_Os01g74030)


Aliases : PUM1, APUM1, LOC_Os01g74030

Description : Pumilio homolog 1 OS=Arabidopsis thaliana (sp|q9zw07|pum1_arath : 664.0)


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g74030.1

Target Alias Description ECC score Gene Family Method Actions
Aob_g06713 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g28239 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001065.14 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001065.15 PUM5, APUM5 No description available 0.02 OrthoFinder output from all 47 species
Dde_g02392 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01024918001 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Lfl_g08945 APUM2, PUM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_12280g0010 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_23070g0010 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Ore_g27289 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g36029 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006119 No alias phospholipase-A1 *(PC-PLA1) & original description: CDS=1-4779 0.02 OrthoFinder output from all 47 species
Spa_g12530 APUM2, PUM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e027653_P001 PUM1, APUM1,... Pumilio homolog 2 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Zm00001e029661_P001 APUM2, PUM2,... Pumilio homolog 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
InterPro domains Description Start Stop
IPR012940 NABP 233 391
IPR012940 NABP 348 558
IPR001313 Pumilio_RNA-bd_rpt 705 737
IPR001313 Pumilio_RNA-bd_rpt 632 662
IPR001313 Pumilio_RNA-bd_rpt 776 805
IPR001313 Pumilio_RNA-bd_rpt 676 700
IPR001313 Pumilio_RNA-bd_rpt 820 852
IPR001313 Pumilio_RNA-bd_rpt 598 627
IPR001313 Pumilio_RNA-bd_rpt 741 771
IPR001313 Pumilio_RNA-bd_rpt 560 593
No external refs found!