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  5. LOC_Os01g73410.1

LOC_Os01g73410.1 (PRAF1, LOC_Os01g73410)


Aliases : PRAF1, LOC_Os01g73410

Description : PH, RCC1 and FYVE domains-containing protein 1 OS=Arabidopsis thaliana (sp|q947d2|praf1_arath : 918.0)


Gene families : OG0000592 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000592_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g73410.1
Cluster HCCA: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
AT1G76950 PRAF1 Regulator of chromosome condensation (RCC1) family with... 0.04 OrthoFinder output from all 47 species
Adi_g036534 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g088439 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g14846 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g03001 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03486 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g09378 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g16098 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07009 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc12g099740.2.1 Solyc12g099740 PH, RCC1 and FYVE domains-containing protein 1... 0.06 OrthoFinder output from all 47 species
Zm00001e015467_P001 Zm00001e015467 PH, RCC1 and FYVE domains-containing protein 1... 0.04 OrthoFinder output from all 47 species
Zm00001e018599_P001 Zm00001e018599 PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
Zm00001e029685_P002 PRAF1, Zm00001e029685 PH, RCC1 and FYVE domains-containing protein 1... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005985 sucrose metabolic process IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
MF GO:0016157 sucrose synthase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR000408 Reg_chr_condens 265 312
IPR000408 Reg_chr_condens 317 365
IPR000408 Reg_chr_condens 148 199
IPR000408 Reg_chr_condens 370 417
IPR000408 Reg_chr_condens 203 251
IPR000408 Reg_chr_condens 95 144
IPR000306 Znf_FYVE 421 486
IPR027988 BRX_N 668 697
IPR013591 Brevis_radix_dom 838 892
No external refs found!