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  5. LOC_Os01g72880.1

LOC_Os01g72880.1 (MLH1, ATMLH1, LOC_Os01g72880)


Aliases : MLH1, ATMLH1, LOC_Os01g72880

Description : component MLH1 of MLH1-PMS1 heterodimer


Gene families : OG0003563 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003563_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g72880.1

Target Alias Description ECC score Gene Family Method Actions
AT4G09140 MLH1, ATMLH1 MUTL-homologue 1 0.03 OrthoFinder output from all 47 species
Adi_g018618 MLH1, ATMLH1 component *(MLH1) of MLH1-PMS1 heterodimer & original... 0.05 OrthoFinder output from all 47 species
Als_g22684 MLH1, ATMLH1 component *(MLH1) of MLH1-PMS1 heterodimer & original... 0.03 OrthoFinder output from all 47 species
Aop_g00761 MLH1, ATMLH1 component *(MLH1) of MLH1-PMS1 heterodimer & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene34424.t1 MLH1, ATMLH1,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0081.g038579 MLH1, ATMLH1 component *(MLH1) of MLH1-PMS1 heterodimer & original... 0.05 OrthoFinder output from all 47 species
Cba_g09585 MLH1, ATMLH1 component *(MLH1) of MLH1-PMS1 heterodimer & original... 0.02 OrthoFinder output from all 47 species
Ceric.1Z069400.1 MLH1, ATMLH1,... component *(MLH1) of MLH1-PMS1 heterodimer & original... 0.08 OrthoFinder output from all 47 species
Cre01.g036050 MLH1, ATMLH1 DNA damage response.DNA repair mechanisms.mismatch... 0.02 OrthoFinder output from all 47 species
Mp5g08620.1 MLH1, ATMLH1 component MLH1 of MLH1-PMS1 heterodimer 0.02 OrthoFinder output from all 47 species
Nbi_g14749 MLH1, ATMLH1 component *(MLH1) of MLH1-PMS1 heterodimer & original... 0.03 OrthoFinder output from all 47 species
Ore_g32916 MLH1, ATMLH1 component *(MLH1) of MLH1-PMS1 heterodimer & original... 0.03 OrthoFinder output from all 47 species
Ppi_g13740 MLH1, ATMLH1 component *(MLH1) of MLH1-PMS1 heterodimer & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0074.g017258 MLH1, ATMLH1 component *(MLH1) of MLH1-PMS1 heterodimer & original... 0.02 OrthoFinder output from all 47 species
Sam_g24394 No alias component *(MLH1) of MLH1-PMS1 heterodimer & original... 0.03 OrthoFinder output from all 47 species
Smo408722 MLH1, ATMLH1 DNA damage response.DNA repair mechanisms.mismatch... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000176 nuclear exosome (RNase complex) IEP HCCA
CC GO:0000178 exosome (RNase complex) IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009452 7-methylguanosine RNA capping IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0032259 methylation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0036260 RNA capping IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1905354 exoribonuclease complex IEP HCCA
InterPro domains Description Start Stop
IPR013507 DNA_mismatch_S5_2-like 226 347
IPR032189 Mlh1_C 443 724
No external refs found!