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  5. LOC_Os01g72834.1

LOC_Os01g72834.1 (LOC_Os01g72834)


Aliases : LOC_Os01g72834

Description : Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana (sp|q9m1s3|arp1_arath : 115.0)


Gene families : OG0000717 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000717_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g72834.1
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00080p00053460 evm_27.TU.AmTr_v1... Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00099p00115860 evm_27.TU.AmTr_v1... Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
AT3G54770 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 OrthoFinder output from all 47 species
AT5G53720 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
Adi_g107699 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene51493.t1 Aspi01Gene51493 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0019.g015267 No alias not classified & original description: CDS=1-609 0.05 OrthoFinder output from all 47 species
Cba_g26221 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g11098 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g10873 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_30439 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Gb_39269 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os02g48340.1 LOC_Os02g48340 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_10429182g0010 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_1682g0010 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Msp_g01579 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g16573 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g03322 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g05821 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g049920.4.1 Solyc04g049920 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Spa_g08652 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g25385 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g54869 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e015892_P001 Zm00001e015892 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
Zm00001e023856_P001 Zm00001e023856 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.11 OrthoFinder output from all 47 species
Zm00001e037573_P001 Zm00001e037573 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 23 78
No external refs found!