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  5. LOC_Os01g70780.1

LOC_Os01g70780.1 (AtATG18a, LOC_Os01g70780)


Aliases : AtATG18a, LOC_Os01g70780

Description : component ATG18 of autophagosome ATG9-2-18 membrane shuttling complex


Gene families : OG0000802 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000802_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g70780.1

Target Alias Description ECC score Gene Family Method Actions
AT2G40810 ATG18C, ATATG18C homolog of yeast autophagy 18C 0.02 OrthoFinder output from all 47 species
Als_g08778 AtATG18a component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.03 OrthoFinder output from all 47 species
Cba_g26260 AtATG18a component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.03 OrthoFinder output from all 47 species
Ehy_g06825 AtATG18a component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.02 OrthoFinder output from all 47 species
GSVIVT01010945001 AtATG18a Vesicle trafficking.autophagosome formation.ATG9-2-18... 0.03 OrthoFinder output from all 47 species
Len_g21184 AtATG18a component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.04 OrthoFinder output from all 47 species
Lfl_g17320 AtATG18a component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.03 OrthoFinder output from all 47 species
MA_205985g0010 ATG18D, ATATG18D component ATG18 of autophagosome ATG9-2-18 membrane... 0.03 OrthoFinder output from all 47 species
Spa_g47962 AtATG18a component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.03 OrthoFinder output from all 47 species
Tin_g08166 AtATG18a component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.04 OrthoFinder output from all 47 species
Tin_g27406 AtATG18a component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0046903 secretion IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140352 export from cell IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 274 302
IPR001680 WD40_repeat 320 351
No external refs found!