1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os01g66160.1

LOC_Os01g66160.1 (REME1, LOC_Os01g66160)


Aliases : REME1, LOC_Os01g66160

Description : Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana (sp|q9si53|pp147_arath : 416.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g66160.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00156450 REME1,... Pentatricopeptide repeat-containing protein At2g03880,... 0.03 OrthoFinder output from all 47 species
AMTR_s00071p00124250 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g13880... 0.03 OrthoFinder output from all 47 species
AT4G33170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 OrthoFinder output from all 47 species
Adi_g003733 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g003854 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g013355 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g034338 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g46569 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02288 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g07731 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07774 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g15073 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g27276 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g31765 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g39090 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05671 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05931 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g16161 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene00209.t1 EMB2758, Aspi01Gene00209 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene02312.t1 Aspi01Gene02312 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene02406.t1 Aspi01Gene02406 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene28051.t3 Aspi01Gene28051 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene36735.t1 Aspi01Gene36735 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene36977.t1 Aspi01Gene36977 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene48128.t1 Aspi01Gene48128 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene55921.t1 OTP82, Aspi01Gene55921 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene56965.t1 Aspi01Gene56965 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0002.g001624 No alias not classified & original description: CDS=110-1882 0.06 OrthoFinder output from all 47 species
Azfi_s0006.g010319 No alias not classified & original description: CDS=1-1401 0.04 OrthoFinder output from all 47 species
Azfi_s0070.g036726 REME1 not classified & original description: CDS=1-1386 0.04 OrthoFinder output from all 47 species
Azfi_s0257.g060572 No alias not classified & original description: CDS=1-2448 0.03 OrthoFinder output from all 47 species
Azfi_s0292.g063362 No alias not classified & original description: CDS=1-2379 0.05 OrthoFinder output from all 47 species
Cba_g07741 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g19059 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g34577 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g49960 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67652 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g74667 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g78384 DOT4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g14022 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g16457 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g24992 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g31119 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Dcu_g06775 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g08431 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g19456 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g23959 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g36058 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g29241 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g03909 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g04831 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g07899 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18979 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18991 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g21510 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g25856 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g28045 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g30637 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g33773 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g54471 LPA66 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g58477 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07101 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07378 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g11258 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g28743 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g31850 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g32485 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g33634 MEF22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g46847 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06724 OTP86 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Nbi_g17487 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g31776 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g05580 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g42856 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43122 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43227 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g44325 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g08380 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57416 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63644 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g65386 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g04435 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g04542 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g15003 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g22357 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g29950 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06887 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g09062 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g39244 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53552 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59340 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g61249 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003163 No alias not classified & original description: CDS=1-2256 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006276 No alias not classified & original description: CDS=1-1806 0.03 OrthoFinder output from all 47 species
Sam_g02448 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12585 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27658 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37190 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g51541 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo100938 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
Smo102968 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 OrthoFinder output from all 47 species
Smo118770 No alias Pentatricopeptide repeat-containing protein At4g14050,... 0.06 OrthoFinder output from all 47 species
Smo173093 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
Smo92456 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Solyc01g095160.3.1 Solyc01g095160 Pentatricopeptide repeat-containing protein At4g37170... 0.03 OrthoFinder output from all 47 species
Solyc03g114010.3.1 Solyc03g114010 Pentatricopeptide repeat-containing protein At2g29760,... 0.08 OrthoFinder output from all 47 species
Solyc10g005090.3.1 Solyc10g005090 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Spa_g02637 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g16702 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g39088 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g53368 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06658 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g21261 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g30234 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g30716 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019751 polyol metabolic process IEP HCCA
BP GO:0032958 inositol phosphate biosynthetic process IEP HCCA
BP GO:0043647 inositol phosphate metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046165 alcohol biosynthetic process IEP HCCA
BP GO:0046173 polyol biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR032867 DYW_dom 383 507
IPR002885 Pentatricopeptide_repeat 183 208
IPR002885 Pentatricopeptide_repeat 284 306
IPR002885 Pentatricopeptide_repeat 82 108
IPR002885 Pentatricopeptide_repeat 10 40
IPR002885 Pentatricopeptide_repeat 110 140
IPR002885 Pentatricopeptide_repeat 210 255
No external refs found!