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  5. LOC_Os01g65410.1

LOC_Os01g65410.1 (SHM7, LOC_Os01g65410)


Aliases : SHM7, LOC_Os01g65410

Description : serine hydroxymethyltransferase. serine hydroxymethyltransferase


Gene families : OG0000518 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000518_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g65410.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00219150 STM, SHM1,... Photosynthesis.photorespiration.serine hydroxymethyltransferase 0.02 OrthoFinder output from all 47 species
AMTR_s00070p00192400 SHM7,... Amino acid metabolism.biosynthesis.serine... 0.02 OrthoFinder output from all 47 species
Aob_g04192 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene38484.t1 SHM7, Aspi01Gene38484 EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Cba_g04023 SHM7 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Ceric.37G043000.1 STM, SHM1,... EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
LOC_Os05g35440.1 SHM7, LOC_Os05g35440 serine hydroxymethyltransferase. serine hydroxymethyltransferase 0.03 OrthoFinder output from all 47 species
Ore_g03183 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0167.g024222 SHM7 EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Tin_g09750 AtSHMT3, SHM3 EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR039429 SHMT-like_dom 144 547
No external refs found!