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  5. LOC_Os01g63400.1

LOC_Os01g63400.1 (LOC_Os01g63400)


Aliases : LOC_Os01g63400

Description : Pentatricopeptide repeat-containing protein At3g09060 OS=Arabidopsis thaliana (sp|q9ss81|pp221_arath : 551.0)


Gene families : OG0001250 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001250_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g63400.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00104100 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g61870,... 0.03 OrthoFinder output from all 47 species
AMTR_s00029p00104950 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g36680,... 0.02 OrthoFinder output from all 47 species
AMTR_s00029p00106010 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g36680,... 0.02 OrthoFinder output from all 47 species
AMTR_s00029p00214000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g09060... 0.03 OrthoFinder output from all 47 species
AMTR_s00032p00197250 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g55890,... 0.05 OrthoFinder output from all 47 species
AMTR_s00221p00020810 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16420,... 0.03 OrthoFinder output from all 47 species
AT2G18520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 OrthoFinder output from all 47 species
AT4G36680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G18475 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G46100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G64320 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
GSVIVT01008016001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
GSVIVT01011280001 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.03 OrthoFinder output from all 47 species
GSVIVT01017298001 No alias Pentatricopeptide repeat-containing protein At1g80150,... 0.02 OrthoFinder output from all 47 species
GSVIVT01024665001 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.03 OrthoFinder output from all 47 species
GSVIVT01031218001 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.02 OrthoFinder output from all 47 species
Gb_00757 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.02 OrthoFinder output from all 47 species
Gb_07822 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.03 OrthoFinder output from all 47 species
Gb_12262 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.02 OrthoFinder output from all 47 species
Gb_14900 EMB1025 Pentatricopeptide repeat-containing protein At4g20090... 0.02 OrthoFinder output from all 47 species
Gb_23196 No alias Pentatricopeptide repeat-containing protein At1g05600... 0.05 OrthoFinder output from all 47 species
Gb_23263 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.03 OrthoFinder output from all 47 species
Gb_37573 No alias Pentatricopeptide repeat-containing protein At5g64320,... 0.03 OrthoFinder output from all 47 species
Gb_38400 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.03 OrthoFinder output from all 47 species
LOC_Os05g04160.1 LOC_Os05g04160 Pentatricopeptide repeat-containing protein At3g48810... 0.01 OrthoFinder output from all 47 species
LOC_Os08g39050.1 LOC_Os08g39050 Pentatricopeptide repeat-containing protein At1g80150,... 0.02 OrthoFinder output from all 47 species
MA_125741g0010 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.03 OrthoFinder output from all 47 species
MA_131324g0010 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.02 OrthoFinder output from all 47 species
MA_137206g0010 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.05 OrthoFinder output from all 47 species
MA_138370g0010 No alias Pentatricopeptide repeat-containing protein At1g80150,... 0.02 OrthoFinder output from all 47 species
MA_17644g0010 No alias Pentatricopeptide repeat-containing protein At2g17525,... 0.02 OrthoFinder output from all 47 species
MA_525159g0010 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.01 OrthoFinder output from all 47 species
MA_57592g0010 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.02 OrthoFinder output from all 47 species
MA_71816g0020 No alias Pentatricopeptide repeat-containing protein At3g14580,... 0.02 OrthoFinder output from all 47 species
MA_742945g0010 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.02 OrthoFinder output from all 47 species
MA_80720g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Solyc02g081860.3.1 EMB1025, Solyc02g081860 Pentatricopeptide repeat-containing protein At4g20090... 0.02 OrthoFinder output from all 47 species
Solyc04g076070.1.1 Solyc04g076070 Pentatricopeptide repeat-containing protein At5g18475... 0.02 OrthoFinder output from all 47 species
Solyc05g012250.3.1 Solyc05g012250 Pentatricopeptide repeat-containing protein At1g80150,... 0.03 OrthoFinder output from all 47 species
Solyc07g045380.3.1 Solyc07g045380 Pentatricopeptide repeat-containing protein At1g05600... 0.02 OrthoFinder output from all 47 species
Solyc09g014210.3.1 Solyc09g014210 Pentatricopeptide repeat-containing protein At3g09060... 0.05 OrthoFinder output from all 47 species
Solyc10g005280.1.1 PPR336, Solyc10g005280 PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.02 OrthoFinder output from all 47 species
Solyc11g068470.3.1 Solyc11g068470 group-II intron mitochondrial splicing factor (MISF74) 0.02 OrthoFinder output from all 47 species
Solyc11g073230.1.1 Solyc11g073230 Pentatricopeptide repeat-containing protein At1g07740,... 0.02 OrthoFinder output from all 47 species
Zm00001e015190_P001 Zm00001e015190 Pentatricopeptide repeat-containing protein At2g18520,... 0.03 OrthoFinder output from all 47 species
Zm00001e028732_P001 Zm00001e028732 Pentatricopeptide repeat-containing protein At3g09060... 0.02 OrthoFinder output from all 47 species
Zm00001e028938_P001 Zm00001e028938 Pentatricopeptide repeat-containing protein At1g55890,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
CC GO:0031262 Ndc80 complex IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0051315 attachment of mitotic spindle microtubules to kinetochore IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 156 205
IPR002885 Pentatricopeptide_repeat 648 695
IPR002885 Pentatricopeptide_repeat 472 521
IPR002885 Pentatricopeptide_repeat 262 311
IPR002885 Pentatricopeptide_repeat 402 451
IPR002885 Pentatricopeptide_repeat 578 625
IPR002885 Pentatricopeptide_repeat 531 569
IPR002885 Pentatricopeptide_repeat 229 256
IPR002885 Pentatricopeptide_repeat 367 392
IPR002885 Pentatricopeptide_repeat 329 358
No external refs found!