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  5. LOC_Os01g61630.1

LOC_Os01g61630.1 (LOC_Os01g61630)


Aliases : LOC_Os01g61630

Description : Pentatricopeptide repeat-containing protein At5g39980, chloroplastic OS=Arabidopsis thaliana (sp|q9fld8|pp408_arath : 560.0)


Gene families : OG0008153 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008153_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g61630.1
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
Ala_g05308 No alias plastidial splicing factor *(PDM3) & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g04901 No alias plastidial splicing factor *(PDM3) & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s1721.g106130 No alias plastidial splicing factor *(PDM3) & original... 0.04 OrthoFinder output from all 47 species
Ceric.01G002800.1 Ceric.01G002800 plastidial splicing factor *(PDM3) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g16308 No alias plastidial splicing factor *(PDM3) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01032591001 No alias Pentatricopeptide repeat-containing protein At5g39980,... 0.03 OrthoFinder output from all 47 species
Msp_g01199 No alias plastidial splicing factor *(PDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g25799 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g58121 No alias plastidial splicing factor *(PDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27577 No alias plastidial splicing factor *(PDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Smo73828 No alias Pentatricopeptide repeat-containing protein At5g39980,... 0.02 OrthoFinder output from all 47 species
Solyc02g087560.1.1 Solyc02g087560 Pentatricopeptide repeat-containing protein At5g39980,... 0.12 OrthoFinder output from all 47 species
Zm00001e019387_P001 Zm00001e019387 Pentatricopeptide repeat-containing protein At5g39980,... 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 189 245
IPR002885 Pentatricopeptide_repeat 384 428
IPR002885 Pentatricopeptide_repeat 131 174
IPR002885 Pentatricopeptide_repeat 304 350
IPR002885 Pentatricopeptide_repeat 564 588
IPR002885 Pentatricopeptide_repeat 524 552
No external refs found!