LOC_Os01g60790.1 (LOC_Os01g60790)

Aliases : LOC_Os01g60790

Description : component RPS26 of SSU proteome

Gene families : OG0001368 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001368_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os01g60790.1
Cluster	HCCA: Cluster_130

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00077p00042770	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.1	OrthoFinder output from all 47 species
AT2G40510	No alias	Ribosomal protein S26e family protein	0.18	OrthoFinder output from all 47 species
AT2G40590	No alias	Ribosomal protein S26e family protein	0.08	OrthoFinder output from all 47 species
AT3G56340	No alias	Ribosomal protein S26e family protein	0.14	OrthoFinder output from all 47 species
Adi_g026438	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Adi_g040240	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Adi_g067777	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Aop_g22616	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Aop_g30554	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Aop_g30851	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Aop_g31638	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Aop_g34888	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Aop_g67998	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aspi01Gene44797.t1	Aspi01Gene44797	component *(eS26) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0008.g011486	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Azfi_s0038.g026316	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Cba_g05427	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cba_g05470	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Cba_g20558	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ceric.21G032100.1	Ceric.21G032100	component *(eS26) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001486.9	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.11	OrthoFinder output from all 47 species
Cre16.g682300	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.24	OrthoFinder output from all 47 species
Dac_g16013	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Dac_g33608	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Dcu_g00870	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g02248	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.13	OrthoFinder output from all 47 species
Dde_g19373	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ehy_g13993	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
GSVIVT01024576001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder output from all 47 species
GSVIVT01032696001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.24	OrthoFinder output from all 47 species
Gb_00995	No alias	component RPS26 of SSU proteome	0.12	OrthoFinder output from all 47 species
Len_g00840	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
MA_114136g0010	No alias	component RPS26 of SSU proteome	0.08	OrthoFinder output from all 47 species
MA_74546g0010	No alias	component RPS26 of SSU proteome	0.06	OrthoFinder output from all 47 species
Mp2g06210.1	No alias	component RPS26 of SSU proteome	0.13	OrthoFinder output from all 47 species
Msp_g40775	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Nbi_g20040	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ore_g04059	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ore_g18641	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Pir_g06425	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pir_g09911	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Pp3c16_9210V3.1	Pp3c16_9210	Ribosomal protein S26e family protein	0.14	OrthoFinder output from all 47 species
Pp3c5_16070V3.1	Pp3c5_16070	Ribosomal protein S26e family protein	0.06	OrthoFinder output from all 47 species
Pp3c6_8910V3.1	Pp3c6_8910	Ribosomal protein S26e family protein	0.07	OrthoFinder output from all 47 species
Ppi_g00321	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ppi_g19798	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ppi_g34120	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Ppi_g42559	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0058.g014966	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sam_g05476	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Sam_g15700	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.12	OrthoFinder output from all 47 species
Sam_g20299	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sam_g47002	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.15	OrthoFinder output from all 47 species
Sam_g48093	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Smo77589	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.11	OrthoFinder output from all 47 species
Solyc04g008810.3.1	Solyc04g008810	component RPS26 of SSU proteome	0.23	OrthoFinder output from all 47 species
Solyc06g007470.3.1	Solyc06g007470	component RPS26 of SSU proteome	0.06	OrthoFinder output from all 47 species
Spa_g03106	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Spa_g25276	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Spa_g36890	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Tin_g26404	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.13	OrthoFinder output from all 47 species
Zm00001e011780_P001	Zm00001e011780	component RPS26 of SSU proteome	0.18	OrthoFinder output from all 47 species
Zm00001e027298_P001	Zm00001e027298	component RPS26 of SSU proteome	0.14	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0006448	regulation of translational elongation	IEP	HCCA
BP	GO:0006449	regulation of translational termination	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	HCCA
BP	GO:0010628	positive regulation of gene expression	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0034248	regulation of amide metabolic process	IEP	HCCA
BP	GO:0034250	positive regulation of amide metabolic process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
MF	GO:0043021	ribonucleoprotein complex binding	IEP	HCCA
MF	GO:0043022	ribosome binding	IEP	HCCA
BP	GO:0043243	positive regulation of protein-containing complex disassembly	IEP	HCCA
BP	GO:0043244	regulation of protein-containing complex disassembly	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0045727	positive regulation of translation	IEP	HCCA
BP	GO:0045901	positive regulation of translational elongation	IEP	HCCA
BP	GO:0045905	positive regulation of translational termination	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051130	positive regulation of cellular component organization	IEP	HCCA
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051247	positive regulation of protein metabolic process	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000892	Ribosomal_S26e	1	106

External Links

No external refs found!

LOC_Os01g60790.1 (LOC_Os01g60790)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation