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Aliases : LINC4, LOC_Os01g56140
Description : CRWN nuclear lamina lamin-like protein
Gene families : OG0002096 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002096_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: LOC_Os01g56140.1 | |
| Cluster | HCCA: Cluster_58 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G67230 | LINC1 | little nuclei1 | 0.06 | OrthoFinder output from all 47 species | |
| AT1G68790 | LINC3 | little nuclei3 | 0.11 | OrthoFinder output from all 47 species | |
| AT5G65770 | LINC4 | little nuclei4 | 0.03 | OrthoFinder output from all 47 species | |
| AT5G65780 | ATBCAT-5 | branched-chain amino acid aminotransferase 5 /... | 0.1 | OrthoFinder output from all 47 species | |
| Adi_g018491 | LINC3 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g055294 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Aev_g06792 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g08422 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Als_g29067 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g07969 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.07 | OrthoFinder output from all 47 species | |
| Aspi01Gene23792.t1 | LINC2, Aspi01Gene23792 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0006.g010369 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g72039 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.07G023500.1 | LINC2, Ceric.07G023500 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.31G070800.1 | LINC2, Ceric.31G070800 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.1 | OrthoFinder output from all 47 species | |
| Dac_g23399 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g09858 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.07 | OrthoFinder output from all 47 species | |
| Dde_g48362 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g07133 | LINC1 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01007428001 | LINC4 | Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01011972001 | LINC3 | Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... | 0.07 | OrthoFinder output from all 47 species | |
| GSVIVT01031076001 | LINC1 | Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... | 0.05 | OrthoFinder output from all 47 species | |
| Lfl_g03466 | LINC3 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g13028 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Mp3g21160.1 | LINC2 | CRWN nuclear lamina lamin-like protein | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g03849 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g10182 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g19679 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.07 | OrthoFinder output from all 47 species | |
| Ppi_g14315 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g14580 | No alias | nuclear lamina lamin-like protein *(CRWN) & original... | 0.06 | OrthoFinder output from all 47 species | |
| Solyc02g089800.3.1 | LINC1, Solyc02g089800 | CRWN nuclear lamina lamin-like protein | 0.09 | OrthoFinder output from all 47 species | |
| Solyc02g091960.4.1 | LINC4, Solyc02g091960 | CRWN nuclear lamina lamin-like protein | 0.08 | OrthoFinder output from all 47 species | |
| Solyc03g045050.4.1 | LINC1, Solyc03g045050 | CRWN nuclear lamina lamin-like protein | 0.06 | OrthoFinder output from all 47 species | |
| Spa_g26205 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g47575 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g05667 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e019705_P002 | LINC4, Zm00001e019705 | CRWN nuclear lamina lamin-like protein | 0.06 | OrthoFinder output from all 47 species | |
| Zm00001e023357_P001 | LINC1, Zm00001e023357 | CRWN nuclear lamina lamin-like protein | 0.14 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000413 | protein peptidyl-prolyl isomerization | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | HCCA |
| MF | GO:0004386 | helicase activity | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006352 | DNA-templated transcription initiation | IEP | HCCA |
| BP | GO:0006354 | DNA-templated transcription elongation | IEP | HCCA |
| BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | HCCA |
| BP | GO:0006367 | transcription initiation at RNA polymerase II promoter | IEP | HCCA |
| BP | GO:0006368 | transcription elongation by RNA polymerase II | IEP | HCCA |
| CC | GO:0008023 | transcription elongation factor complex | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0009891 | positive regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0009893 | positive regulation of metabolic process | IEP | HCCA |
| BP | GO:0010557 | positive regulation of macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0010604 | positive regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0016570 | histone modification | IEP | HCCA |
| CC | GO:0016593 | Cdc73/Paf1 complex | IEP | HCCA |
| MF | GO:0016859 | cis-trans isomerase activity | IEP | HCCA |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
| BP | GO:0018193 | peptidyl-amino acid modification | IEP | HCCA |
| BP | GO:0018208 | peptidyl-proline modification | IEP | HCCA |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
| BP | GO:0031325 | positive regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031328 | positive regulation of cellular biosynthetic process | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| BP | GO:0032784 | regulation of DNA-templated transcription elongation | IEP | HCCA |
| BP | GO:0032786 | positive regulation of DNA-templated transcription, elongation | IEP | HCCA |
| BP | GO:0032968 | positive regulation of transcription elongation by RNA polymerase II | IEP | HCCA |
| BP | GO:0034243 | regulation of transcription elongation by RNA polymerase II | IEP | HCCA |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:0045893 | positive regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0045935 | positive regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0045944 | positive regulation of transcription by RNA polymerase II | IEP | HCCA |
| BP | GO:0048518 | positive regulation of biological process | IEP | HCCA |
| BP | GO:0048522 | positive regulation of cellular process | IEP | HCCA |
| BP | GO:0051173 | positive regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051254 | positive regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
| BP | GO:1902680 | positive regulation of RNA biosynthetic process | IEP | HCCA |
| BP | GO:1903508 | positive regulation of nucleic acid-templated transcription | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |