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  5. LOC_Os01g56000.1

LOC_Os01g56000.1 (LOC_Os01g56000)


Aliases : LOC_Os01g56000

Description : no hits & (original description: none)


Gene families : OG0006058 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006058_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g56000.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g083879 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g13641 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0412.g068539 No alias not classified & original description: CDS=83-4372 0.04 OrthoFinder output from all 47 species
Cba_g17445 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021532.11 FPA No description available 0.02 OrthoFinder output from all 47 species
Dac_g13628 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g10975 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12903 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01009356001 No alias No description available 0.04 OrthoFinder output from all 47 species
Gb_33199 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g28464 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g03490 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10427717g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_10431539g0010 No alias no hits & (original description: none) 0.12 OrthoFinder output from all 47 species
Mp3g07560.1 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Msp_g13220 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g07631 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16669 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Pir_g12250 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g41193 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04710 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g08969 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Solyc04g077940.4.1 Solyc04g077940 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Tin_g12032 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e019718_P003 Zm00001e019718 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR012921 SPOC_C 993 1136
IPR000504 RRM_dom 720 783
IPR000504 RRM_dom 556 613
No external refs found!