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  5. LOC_Os01g53890.1

LOC_Os01g53890.1 (LOC_Os01g53890)


Aliases : LOC_Os01g53890

Description : no hits & (original description: none)


Gene families : OG0006766 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006766_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g53890.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00268660 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT2G19870 No alias tRNA/rRNA methyltransferase (SpoU) family protein 0.11 OrthoFinder output from all 47 species
Als_g02547 No alias MRM1-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0156.g053712 No alias MRM1-type rRNA methyltransferase & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.1Z044300.1 Ceric.1Z044300 MRM1-type rRNA methyltransferase & original description:... 0.02 OrthoFinder output from all 47 species
Cre13.g566150 No alias No description available 0.03 OrthoFinder output from all 47 species
Dcu_g14803 No alias MRM1-type rRNA methyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g02584 No alias MRM1-type rRNA methyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01015302001 No alias No description available 0.12 OrthoFinder output from all 47 species
Gb_28913 No alias no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
MA_123340g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Msp_g07424 No alias MRM1-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g07821 No alias MRM1-type rRNA methyltransferase & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0035.g011404 No alias MRM1-type rRNA methyltransferase & original description:... 0.03 OrthoFinder output from all 47 species
Solyc05g017990.4.1 Solyc05g017990 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Zm00001e029079_P001 Zm00001e029079 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
MF GO:0008168 methyltransferase activity IEA Interproscan
MF GO:0008173 RNA methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0030247 polysaccharide binding IEP HCCA
MF GO:2001070 starch binding IEP HCCA
InterPro domains Description Start Stop
IPR001537 SpoU_MeTrfase 327 451
IPR013123 SpoU_subst-bd 225 308
No external refs found!