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  5. LOC_Os01g52060.1

LOC_Os01g52060.1 (LOC_Os01g52060)


Aliases : LOC_Os01g52060

Description : no hits & (original description: none)


Gene families : OG0003275 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003275_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g52060.1
Cluster HCCA: Cluster_298

Target Alias Description ECC score Gene Family Method Actions
Gb_00507 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_06647 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Len_g39763 AGP41 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Len_g48257 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
MA_103726g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ppi_g09113 AtAGP20, AGP20 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Solyc12g007045.1.1 AGP41, Solyc12g007045 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016849 phosphorus-oxygen lyase activity IEP HCCA
MF GO:0033897 ribonuclease T2 activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR009424 AGP16/20/22/41 29 64
No external refs found!