1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os01g51300.1

LOC_Os01g51300.1 (NFC04, MSI4, NFC4,...)


Aliases : NFC04, MSI4, NFC4, ACG1, FVE, ATMSI4, LOC_Os01g51300

Description : component CAF1c/MSI of CAF1 histone chaperone complex


Gene families : OG0004797 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004797_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g51300.1

Target Alias Description ECC score Gene Family Method Actions
AT4G29730 NFC5, MSI5 nucleosome/chromatin assembly factor group C5 0.03 OrthoFinder output from all 47 species
Adi_g060228 NFC04, MSI4,... flowering time factor *(FVE) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g078795 NFC04, MSI4,... flowering time factor *(FVE) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g03800 NFC04, MSI4,... flowering time factor *(FVE) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.25G001800.1 NFC04, MSI4,... flowering time factor *(FVE) & original description:... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000194.75 NFC04, MSI4,... WD-40 repeat-containing protein MSI4 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre06.g268450 NFC04, MSI4,... Chromatin organisation.histone chaperone activities.CAF1... 0.04 OrthoFinder output from all 47 species
Dac_g02207 NFC04, MSI4,... flowering time factor *(FVE) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01015200001 NFC04, MSI4,... Chromatin organisation.histone chaperone activities.CAF1... 0.05 OrthoFinder output from all 47 species
GSVIVT01016852001 NFC04, MSI4,... Chromatin organisation.histone chaperone activities.CAF1... 0.05 OrthoFinder output from all 47 species
Gb_32208 NFC04, MSI4,... component CAF1c/MSI of CAF1 histone chaperone complex 0.03 OrthoFinder output from all 47 species
Len_g02796 NFC04, MSI4,... flowering time factor *(FVE) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc07g039320.2.1 NFC04, MSI4,... WD-40 repeat-containing protein MSI4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Tin_g20539 NFC04, MSI4,... flowering time factor *(FVE) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e028156_P001 NFC04, MSI4,... component CAF1c/MSI of CAF1 histone chaperone complex 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007051 spindle organization IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010498 proteasomal protein catabolic process IEP HCCA
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP HCCA
BP GO:0015780 nucleotide-sugar transmembrane transport IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
BP GO:0051225 spindle assembly IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
CC GO:0070652 HAUS complex IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
BP GO:1901264 carbohydrate derivative transport IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 168 202
IPR001680 WD40_repeat 335 372
IPR001680 WD40_repeat 291 323
IPR001680 WD40_repeat 243 278
IPR022052 Histone-bd_RBBP4_N 12 78
No external refs found!