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LOC_Os01g50470.1 (LOC_Os01g50470)


Aliases : LOC_Os01g50470

Description : PH, RCC1 and FYVE domains-containing protein 1 OS=Arabidopsis thaliana (sp|q947d2|praf1_arath : 922.0)


Gene families : OG0000592 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000592_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g50470.1
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
AT4G14368 No alias Regulator of chromosome condensation (RCC1) family protein 0.04 OrthoFinder output from all 47 species
Dac_g11534 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g05030 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e007139_P001 Zm00001e007139 PH, RCC1 and FYVE domains-containing protein 1... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR013591 Brevis_radix_dom 968 1021
IPR000306 Znf_FYVE 600 665
IPR000408 Reg_chr_condens 549 596
IPR000408 Reg_chr_condens 495 544
IPR000408 Reg_chr_condens 381 430
IPR000408 Reg_chr_condens 275 323
IPR000408 Reg_chr_condens 446 492
IPR000408 Reg_chr_condens 326 376
No external refs found!