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  5. LOC_Os01g48380.1

LOC_Os01g48380.1 (EMB2279, EMB88, LOC_Os01g48380)


Aliases : EMB2279, EMB88, LOC_Os01g48380

Description : Pentatricopeptide repeat-containing protein At1g30610, chloroplastic OS=Arabidopsis thaliana (sp|q9sa76|ppr64_arath : 647.0)


Gene families : OG0189173 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g48380.1
Cluster HCCA: Cluster_355

Target Alias Description ECC score Gene Family Method Actions
Zm00001e028053_P001 EMB2279, EMB88,... Pentatricopeptide repeat-containing protein At1g30610,... 0.03 OrthoFinder output from all 39 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003747 translation release factor activity IEP HCCA
BP GO:0006415 translational termination IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 671 699
IPR002885 Pentatricopeptide_repeat 516 541
IPR002885 Pentatricopeptide_repeat 738 782
IPR002885 Pentatricopeptide_repeat 597 641
No external refs found!