LOC_Os01g48380.1 (EMB2279, EMB88, LOC_Os01g48380)

Aliases : EMB2279, EMB88, LOC_Os01g48380

Description : Pentatricopeptide repeat-containing protein At1g30610, chloroplastic OS=Arabidopsis thaliana (sp|q9sa76|ppr64_arath : 647.0)

Gene families : OG0189173 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: LOC_Os01g48380.1
Cluster HCCA: Cluster_355

Target Alias Description ECC score Gene Family Method Actions
Zm00001e028053_P001 EMB2279, EMB88,... Pentatricopeptide repeat-containing protein At1g30610,... 0.03 OrthoFinder output from all 39 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003747 translation release factor activity IEP HCCA
BP GO:0006415 translational termination IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 671 699
IPR002885 Pentatricopeptide_repeat 516 541
IPR002885 Pentatricopeptide_repeat 738 782
IPR002885 Pentatricopeptide_repeat 597 641
No external refs found!