LOC_Os01g48180.1 (LOC_Os01g48180)

Aliases : LOC_Os01g48180

Description : HOX-like transcription factor

Gene families : OG0001590 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001590_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os01g48180.1
Cluster	HCCA: Cluster_105

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00058p00137050	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HB...	0.02	OrthoFinder output from all 47 species
Adi_g012033	HB-1	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.02	OrthoFinder output from all 47 species
Als_g63176	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g21500	No alias	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.02	OrthoFinder output from all 47 species
Dac_g26704	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g48258	HB-1	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.02	OrthoFinder output from all 47 species
Ehy_g30736	No alias	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.04	OrthoFinder output from all 47 species
GSVIVT01020605001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
Lfl_g10310	No alias	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.02	OrthoFinder output from all 47 species
Pir_g27644	No alias	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Sam_g50552	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e020198_P001	HB-1, Zm00001e020198	HOX-like transcription factor	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003916	DNA topoisomerase activity	IEP	HCCA
MF	GO:0003917	DNA topoisomerase type I (single strand cut, ATP-independent) activity	IEP	HCCA
BP	GO:0006265	DNA topological change	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR028941	WHIM2_dom	956	1028
IPR018501	DDT_dom	387	435
IPR007759	Asxl_HARE-HTH	555	623
IPR028942	WHIM1_dom	778	820

External Links

No external refs found!

LOC_Os01g48180.1 (LOC_Os01g48180)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation