LOC_Os01g47730.1 (AtRABA1f, RABA1f,...)

Aliases : AtRABA1f, RABA1f, LOC_Os01g47730

Description : A-class RAB GTPase

Gene families : OG0000247 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000247_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os01g47730.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00108p00139240	AtRABA1f,...	Ras-related protein RABA1f OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
AT1G05810	ARA-1, ATRABA5E,...	RAB GTPase homolog A5E	0.03	OrthoFinder output from all 47 species
AT1G28550	RABA1i, AtRABA1i	RAB GTPase homolog A1I	0.03	OrthoFinder output from all 47 species
AT1G73640	RABA6a, AtRABA6a	RAB GTPase homolog A6A	0.04	OrthoFinder output from all 47 species
AT2G33870	ArRABA1h	RAB GTPase homolog A1H	0.05	OrthoFinder output from all 47 species
Adi_g049634	ATRABA2A,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g081036	AtRABA5d, RABA5d	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g17596	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Als_g37483	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g04921	AtRABA5a, RABA5a	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g01569	AtRABA5a, RABA5a	A-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene26703.t2	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene69385.t1	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0056.g034200	AtRABA1f, RABA1f	A-class RAB GTPase & original description: CDS=99-740	0.05	OrthoFinder output from all 47 species
Azfi_s2632.g112466	ATRABA2A,...	A-class RAB GTPase & original description: CDS=274-942	0.03	OrthoFinder output from all 47 species
Cba_g11161	ATRABA2A,...	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.32G031600.1	ATRABA5C, ARA4,...	A-class RAB GTPase & original description:...	0.02	OrthoFinder output from all 47 species
Dde_g03286	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g04229	ARA-1, ATRABA5E,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g02106	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g05302	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g10712	AtRABA5d, RABA5d	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01014250001	AtRABA1f, RABA1f	Vesicle trafficking.regulation of membrane tethering and...	0.03	OrthoFinder output from all 47 species
Gb_37243	AtRABA5a, RABA5a	A-class RAB GTPase	0.02	OrthoFinder output from all 47 species
LOC_Os03g62600.1	ATRABA2A,...	A-class RAB GTPase	0.05	OrthoFinder output from all 47 species
Lfl_g27141	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g30458	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.06	OrthoFinder output from all 47 species
Msp_g09974	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g16173	AtRABA5d, RABA5d	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g20558	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g01090	AtRABA5a, RABA5a	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g15145	AtRABA5d, RABA5d	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g23062	AtRABA5d, RABA5d	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g27739	No alias	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g27740	No alias	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g30254	No alias	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g40897	No alias	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Smo442026	ATRABA5C, ARA4,...	Vesicle trafficking.regulation of membrane tethering and...	0.02	OrthoFinder output from all 47 species
Solyc03g006270.3.1	AtRABA1f,...	A-class RAB GTPase	0.04	OrthoFinder output from all 47 species
Solyc03g079900.3.1	RABA2b,...	A-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Solyc03g118820.4.1	RABA6a,...	A-class RAB GTPase	0.03	OrthoFinder output from all 47 species
Spa_g07579	AtRABA5a, RABA5a	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g12437	AtRABA5a, RABA5a	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g02396	AtRABA5a, RABA5a	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e020213_P001	AtRABA1f,...	A-class RAB GTPase	0.14	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0005984	disaccharide metabolic process	IEP	HCCA
BP	GO:0005991	trehalose metabolic process	IEP	HCCA
BP	GO:0005992	trehalose biosynthetic process	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0009311	oligosaccharide metabolic process	IEP	HCCA
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	HCCA
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0040008	regulation of growth	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0045927	positive regulation of growth	IEP	HCCA
BP	GO:0046351	disaccharide biosynthetic process	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
MF	GO:0051213	dioxygenase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	21	181

External Links

No external refs found!

LOC_Os01g47730.1 (AtRABA1f, RABA1f,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation