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  5. LOC_Os01g43130.1

LOC_Os01g43130.1 (LOC_Os01g43130)


Aliases : LOC_Os01g43130

Description : DEAD-box ATP-dependent RNA helicase 26 OS=Oryza sativa subsp. japonica (sp|q0jl73|rh26_orysj : 968.0)


Gene families : OG0001618 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001618_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g43130.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00261910 evm_27.TU.AmTr_v1... Probable DEAD-box ATP-dependent RNA helicase 48... 0.02 OrthoFinder output from all 47 species
AT5G63630 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 OrthoFinder output from all 47 species
Aop_g13231 No alias mRNA helicase *(RH31) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g12157 No alias mRNA helicase *(RH31) & original description: none 0.02 OrthoFinder output from all 47 species
Gb_09254 No alias DEAD-box ATP-dependent RNA helicase 31 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Lfl_g03200 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30281 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0015098 molybdate ion transmembrane transporter activity IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
BP GO:0015689 molybdate ion transport IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 312 421
IPR011545 DEAD/DEAH_box_helicase_dom 98 270
No external refs found!