LOC_Os01g42370.1 (ABCG40, PDR12,...)

Aliases : ABCG40, PDR12, ATABCG40, ATPDR12, LOC_Os01g42370

Description : subfamily ABCG transporter

Gene families : OG0000071 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os01g42370.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00039p00225530	PIS1, ABCG37,...	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
AMTR_s00122p00120860	ABCG40, PDR12,...	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
AT1G15210	ATPDR7, PDR7	pleiotropic drug resistance 7	0.02	OrthoFinder output from all 47 species
AT1G59870	PEN3, ABCG36,...	ABC-2 and Plant PDR ABC-type transporter family protein	0.01	OrthoFinder output from all 47 species
Azfi_s0077.g038045	PEN3, ABCG36,...	subfamily ABCG transporter & original description: CDS=1-4176	0.02	OrthoFinder output from all 47 species
Ceric.38G052500.1	PEN3, ABCG36,...	subfamily ABCG transporter & original description:...	0.01	OrthoFinder output from all 47 species
GSVIVT01031378001	PDR11, ATPDR11	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
GSVIVT01034741001	PDR11, ATPDR11	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
GSVIVT01034748001	PDR11, ATPDR11	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
Gb_38109	ABCG40, PDR12,...	subfamily ABCG transporter	0.03	OrthoFinder output from all 47 species
LOC_Os01g42410.1	ABCG40, PDR12,...	subfamily ABCG transporter	0.01	OrthoFinder output from all 47 species
LOC_Os02g21340.1	PDR11, ATPDR11,...	subfamily ABCG transporter	0.03	OrthoFinder output from all 47 species
LOC_Os07g33780.1	PDR6, ATPDR6,...	subfamily ABCG transporter	0.01	OrthoFinder output from all 47 species
LOC_Os08g29570.1	ABCG40, PDR12,...	subfamily ABCG transporter	0.02	OrthoFinder output from all 47 species
LOC_Os12g13720.1	ATPDR5, PDR5,...	subfamily ABCG transporter	0.08	OrthoFinder output from all 47 species
Pir_g18638	PEN3, ABCG36,...	subfamily ABCG transporter & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g40984	PDR6, ATPDR6	subfamily ABCG transporter & original description: none	0.02	OrthoFinder output from all 47 species
Solyc02g055540.1.1	ATPDR3, PDR3,...	ABC transporter G family member 31 OS=Arabidopsis...	0.01	OrthoFinder output from all 47 species
Solyc05g055330.3.1	PDR6, ATPDR6,...	subfamily ABCG transporter	0.03	OrthoFinder output from all 47 species
Solyc12g019620.2.1	ABCG40, PDR12,...	subfamily ABCG transporter	0.02	OrthoFinder output from all 47 species
Solyc12g019640.2.1	ABCG40, PDR12,...	subfamily ABCG transporter	0.02	OrthoFinder output from all 47 species
Tin_g27149	PEN3, ABCG36,...	subfamily ABCG transporter & original description: none	0.01	OrthoFinder output from all 47 species
Tin_g32214	PDR11, ATPDR11	subfamily ABCG transporter & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e006460_P001	PDR11, ATPDR11,...	subfamily ABCG transporter	0.03	OrthoFinder output from all 47 species
Zm00001e020667_P001	ABCG40, PDR12,...	subfamily ABCG transporter	0.01	OrthoFinder output from all 47 species
Zm00001e024257_P001	PDR11, ATPDR11,...	subfamily ABCG transporter	0.02	OrthoFinder output from all 47 species
Zm00001e033689_P001	PDR11, ATPDR11,...	subfamily ABCG transporter	0.01	OrthoFinder output from all 47 species
Zm00001e039353_P001	PIS1, ABCG37,...	subfamily ABCG transporter	0.02	OrthoFinder output from all 47 species
Zm00001e040575_P001	PDR6, ATPDR6,...	subfamily ABCG transporter	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR013525	ABC_2_trans	1176	1386
IPR013525	ABC_2_trans	525	737
IPR029481	ABC_trans_N	113	163
IPR003439	ABC_transporter-like_ATP-bd	895	1047
IPR013581	PDR_assoc	742	807
IPR003439	ABC_transporter-like_ATP-bd	189	371

External Links

No external refs found!

LOC_Os01g42370.1 (ABCG40, PDR12,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation