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  5. LOC_Os01g39380.1

LOC_Os01g39380.1 (SCD1, LOC_Os01g39380)


Aliases : SCD1, LOC_Os01g39380

Description : SCD1 component of post-Golgi trafficking SCD complex


Gene families : OG0004472 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004472_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g39380.1
Cluster HCCA: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00104p00054580 SCD1,... Vesicle trafficking.endomembrane trafficking.post-Golgi... 0.02 OrthoFinder output from all 47 species
AT1G49040 SCD1 stomatal cytokinesis defective / SCD1 protein (SCD1) 0.16 OrthoFinder output from all 47 species
Aev_g01559 SCD1 component *(SCD1)of post-Golgi trafficking SCD complex &... 0.02 OrthoFinder output from all 47 species
Als_g05136 SCD1 component *(SCD1)of post-Golgi trafficking SCD complex &... 0.07 OrthoFinder output from all 47 species
Aob_g10698 SCD1 component *(SCD1)of post-Golgi trafficking SCD complex &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene31784.t1 SCD1, Aspi01Gene31784 component *(SCD1)of post-Golgi trafficking SCD complex &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene31787.t1 SCD1, Aspi01Gene31787 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s1726.g106181 SCD1 component *(SCD1)of post-Golgi trafficking SCD complex &... 0.03 OrthoFinder output from all 47 species
Cba_g01343 SCD1 component *(SCD1)of post-Golgi trafficking SCD complex &... 0.04 OrthoFinder output from all 47 species
Ceric.26G004000.1 SCD1, Ceric.26G004000 component *(SCD1)of post-Golgi trafficking SCD complex &... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000157.21 SCD1 DENN domain and WD repeat-containing protein SCD1... 0.01 OrthoFinder output from all 47 species
Cre07.g352900 No alias DENN domain and WD repeat-containing protein SCD1... 0.02 OrthoFinder output from all 47 species
Dcu_g06506 SCD1 component *(SCD1)of post-Golgi trafficking SCD complex &... 0.14 OrthoFinder output from all 47 species
Dde_g03996 SCD1 component *(SCD1)of post-Golgi trafficking SCD complex &... 0.04 OrthoFinder output from all 47 species
GSVIVT01008260001 SCD1 Vesicle trafficking.endomembrane trafficking.post-Golgi... 0.08 OrthoFinder output from all 47 species
Gb_36258 SCD1 SCD1 component of post-Golgi trafficking SCD complex 0.03 OrthoFinder output from all 47 species
Lfl_g05730 SCD1 component *(SCD1)of post-Golgi trafficking SCD complex &... 0.09 OrthoFinder output from all 47 species
MA_895242g0020 SCD1 DENN domain and WD repeat-containing protein SCD1... 0.02 OrthoFinder output from all 47 species
Mp5g20500.1 SCD1 SCD1 component of post-Golgi trafficking SCD complex 0.04 OrthoFinder output from all 47 species
Nbi_g09995 SCD1 component *(SCD1)of post-Golgi trafficking SCD complex &... 0.05 OrthoFinder output from all 47 species
Ore_g18307 SCD1 component *(SCD1)of post-Golgi trafficking SCD complex &... 0.03 OrthoFinder output from all 47 species
Sam_g14554 No alias component *(SCD1)of post-Golgi trafficking SCD complex &... 0.05 OrthoFinder output from all 47 species
Smo118822 SCD1 Vesicle trafficking.endomembrane trafficking.post-Golgi... 0.03 OrthoFinder output from all 47 species
Solyc03g119650.3.1 SCD1, Solyc03g119650 SCD1 component of post-Golgi trafficking SCD complex 0.06 OrthoFinder output from all 47 species
Tin_g08291 SCD1 component *(SCD1)of post-Golgi trafficking SCD complex &... 0.05 OrthoFinder output from all 47 species
Zm00001e020506_P001 SCD1, Zm00001e020506 SCD1 component of post-Golgi trafficking SCD complex 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP HCCA
CC GO:0000145 exocyst IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0010921 regulation of phosphatase activity IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
BP GO:0019220 regulation of phosphate metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0019902 phosphatase binding IEP HCCA
MF GO:0019903 protein phosphatase binding IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0031399 regulation of protein modification process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0035303 regulation of dephosphorylation IEP HCCA
BP GO:0035304 regulation of protein dephosphorylation IEP HCCA
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0051174 regulation of phosphorus metabolic process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051336 regulation of hydrolase activity IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0120227 acyl-CoA binding IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
MF GO:1901567 fatty acid derivative binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR005113 uDENN_dom 36 104
IPR005112 dDENN_dom 429 481
IPR001680 WD40_repeat 876 925
IPR001680 WD40_repeat 1056 1090
IPR001680 WD40_repeat 934 967
IPR001680 WD40_repeat 972 1008
IPR001680 WD40_repeat 1095 1131
IPR001194 cDENN_dom 125 293
No external refs found!