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  5. LOC_Os01g39360.1

LOC_Os01g39360.1 (LOC_Os01g39360)


Aliases : LOC_Os01g39360

Description : no hits & (original description: none)


Gene families : OG0001023 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001023_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g39360.1
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
LOC_Os01g15190.1 LOC_Os01g15190 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os01g41500.1 LOC_Os01g41500 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os02g25140.1 LOC_Os02g25140 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os03g31640.1 LOC_Os03g31640 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os03g33290.1 LOC_Os03g33290 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
LOC_Os03g36470.1 LOC_Os03g36470 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os04g19100.1 LOC_Os04g19100 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
LOC_Os04g28900.1 LOC_Os04g28900 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os05g23280.1 LOC_Os05g23280 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os05g32040.1 LOC_Os05g32040 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os05g43340.1 LOC_Os05g43340 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os06g23080.1 LOC_Os06g23080 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os06g25630.1 LOC_Os06g25630 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os06g35380.1 LOC_Os06g35380 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os07g18200.1 LOC_Os07g18200 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os07g27690.1 LOC_Os07g27690 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os07g27820.1 LOC_Os07g27820 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os08g13500.1 LOC_Os08g13500 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os08g13560.1 LOC_Os08g13560 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os08g19460.1 LOC_Os08g19460 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os08g23990.1 LOC_Os08g23990 no hits & (original description: none) 0.22 OrthoFinder output from all 47 species
LOC_Os09g15140.1 LOC_Os09g15140 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os10g11930.1 LOC_Os10g11930 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os12g16960.1 LOC_Os12g16960 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os12g20350.1 LOC_Os12g20350 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os12g23010.1 LOC_Os12g23010 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os12g23540.1 LOC_Os12g23540 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os12g23640.1 LOC_Os12g23640 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
LOC_Os12g43280.1 LOC_Os12g43280 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!