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  5. LOC_Os01g37842.1

LOC_Os01g37842.1 (LOC_Os01g37842)


Aliases : LOC_Os01g37842

Description : no hits & (original description: none)


Gene families : OG0007233 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007233_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g37842.1

Target Alias Description ECC score Gene Family Method Actions
AT3G20430 No alias CONTAINS InterPro DOMAIN/s: Phosphorylated adapter RNA... 0.05 OrthoFinder output from all 47 species
Aev_g01094 No alias snRNA export adaptor *(PHAX) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0001.g000509 No alias snRNA export adaptor *(PHAX) & original description: CDS=164-1273 0.01 OrthoFinder output from all 47 species
Lfl_g30309 No alias snRNA export adaptor *(PHAX) & original description: none 0.04 OrthoFinder output from all 47 species
MA_10435239g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Tin_g03744 No alias snRNA export adaptor *(PHAX) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e027739_P001 Zm00001e027739 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR019385 PHAX_RNA-binding_domain 104 183
No external refs found!