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  5. LOC_Os01g36890.2

LOC_Os01g36890.2 (LOC_Os01g36890)


Aliases : LOC_Os01g36890

Description : RNA helicase (Sub2). helicase component UAP56 of TREX/THO mRNP trafficking complex


Gene families : OG0002123 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002123_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g36890.2

Target Alias Description ECC score Gene Family Method Actions
AT5G11170 No alias DEAD/DEAH box RNA helicase family protein 0.04 OrthoFinder output from all 47 species
AT5G11200 No alias DEAD/DEAH box RNA helicase family protein 0.04 OrthoFinder output from all 47 species
Als_g32429 No alias helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species
Als_g52184 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g30475 No alias helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene43281.t1 Aspi01Gene43281 helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species
Cre17.g719000 No alias RNA processing.messenger ribonucleoprotein particle... 0.03 OrthoFinder output from all 47 species
Dcu_g19847 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g13215 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
MA_99733g0010 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.03 OrthoFinder output from all 47 species
Pir_g07150 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g40258 No alias helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g51328 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Solyc06g066060.3.1 Solyc06g066060 RNA helicase (Sub2). helicase component UAP56 of... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 193 300
IPR011545 DEAD/DEAH_box_helicase_dom 2 153
No external refs found!