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  5. LOC_Os01g28690.2

LOC_Os01g28690.2 (LOC_Os01g28690)


Aliases : LOC_Os01g28690

Description : NUP98 nucleoporin of nuclear pore complex


Gene families : OG0001205 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001205_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: LOC_Os01g28690.2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00231390 NUP96, PRE,... Nuclear pore complex protein NUP96 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Adi_g086878 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0012.g012932 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.02 OrthoFinder output from all 47 species
Ceric.29G008200.1 NUP96, PRE,... scaffold nucleoporin of nuclear pore complex & original... 0.03 OrthoFinder output from all 47 species
Dcu_g22620 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01017553001 NUP96, PRE, SAR3, MOS3 Nuclear pore complex protein NUP96 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Pir_g12223 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e020801_P003 Zm00001e020801 NUP98 nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
BP GO:0006913 nucleocytoplasmic transport IEA Interproscan
MF GO:0017056 structural constituent of nuclear pore IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007230 Nup98_auto-Pept-S59_dom 474 615
No external refs found!