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  5. LOC_Os01g27730.1

LOC_Os01g27730.1 (LOC_Os01g27730)


Aliases : LOC_Os01g27730

Description : NUG1/NSN1 LSU processome regulatory GTPase


Gene families : OG0005439 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005439_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g27730.1
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00109p00118420 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from all 47 species
AT3G07050 No alias GTP-binding family protein 0.2 OrthoFinder output from all 47 species
Als_g01808 No alias regulatory GTPase (NUG1/NSN1) of LSU processome &... 0.02 OrthoFinder output from all 47 species
Azfi_s0011.g012682 No alias regulatory GTPase (NUG1/NSN1) of LSU processome &... 0.07 OrthoFinder output from all 47 species
Ceric.24G062000.1 Ceric.24G062000 regulatory GTPase (NUG1/NSN1) of LSU processome &... 0.07 OrthoFinder output from all 47 species
Cre12.g533050 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 OrthoFinder output from all 47 species
GSVIVT01028584001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.19 OrthoFinder output from all 47 species
Gb_31371 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.07 OrthoFinder output from all 47 species
Mp8g17210.1 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.12 OrthoFinder output from all 47 species
Ore_g18478 No alias regulatory GTPase (NUG1/NSN1) of LSU processome &... 0.02 OrthoFinder output from all 47 species
Pp3c12_9000V3.1 Pp3c12_9000 GTP-binding family protein 0.02 OrthoFinder output from all 47 species
Pp3c16_1080V3.1 Pp3c16_1080 GTP-binding family protein 0.04 OrthoFinder output from all 47 species
Sam_g19575 No alias regulatory GTPase (NUG1/NSN1) of LSU processome &... 0.03 OrthoFinder output from all 47 species
Solyc06g083520.3.1 Solyc06g083520 NUG1/NSN1 LSU processome regulatory GTPase 0.03 OrthoFinder output from all 47 species
Solyc09g061430.3.1 Solyc09g061430 NUG1/NSN1 LSU processome regulatory GTPase 0.09 OrthoFinder output from all 47 species
Zm00001e004937_P002 Zm00001e004937 NUG1/NSN1 LSU processome regulatory GTPase 0.1 OrthoFinder output from all 47 species
Zm00001e012467_P001 Zm00001e012467 NUG1/NSN1 LSU processome regulatory GTPase 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR014813 Gnl3_N_dom 165 240
IPR006073 GTP-bd 420 485
No external refs found!