LOC_Os01g27160.1 (AXR6, ATCUL1, CUL1,...)

Aliases : AXR6, ATCUL1, CUL1, LOC_Os01g27160

Description : scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3 ligase complexes

Gene families : OG0001888 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001888_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os01g27160.1
Cluster	HCCA: Cluster_9

Target	Alias	Description	ECC score	Gene Family Method	Actions
AT1G02980	ATCUL2, CUL2	cullin 2	0.04	OrthoFinder output from all 47 species
Solyc09g010050.1.1	AXR6, ATCUL1,...	scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
MF	GO:0031625	ubiquitin protein ligase binding	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
MF	GO:0044389	ubiquitin-like protein ligase binding	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	HCCA
CC	GO:0032993	protein-DNA complex	IEP	HCCA
CC	GO:0044815	DNA packaging complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR019559	Cullin_neddylation_domain	676	737
IPR001373	Cullin_N	40	649

External Links

No external refs found!