LOC_Os01g27040.1 (CHR17, LOC_Os01g27040)

Aliases : CHR17, LOC_Os01g27040

Description : chromatin remodeling factor (Iswi)

Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os01g27040.1
Cluster	HCCA: Cluster_27

Target	Alias	Description	ECC score	Gene Family Method
AT2G25170	PKL, GYM, CHR6,...	chromatin remodeling factor CHD3 (PICKLE)	0.03	OrthoFinder output from all 47 species
AT5G19310	No alias	Homeotic gene regulator	0.04	OrthoFinder output from all 47 species
AT5G66750	CHR01, CHR1,...	chromatin remodeling 1	0.03	OrthoFinder output from all 47 species
Aev_g09087	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g28495	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g03868	CHR11	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g14847	CHR5	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g22693	CHR17	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.03	OrthoFinder output from all 47 species
Aob_g29989	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.02	OrthoFinder output from all 47 species
Aop_g06161	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g08885	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g09627	CHR11	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g20304	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.21G025000.1	CHR11, Ceric.21G025000	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000545.10	ATCHR12	Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020960.24	CHR5	Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Dcu_g42061	CHR5	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g42511	PKL, GYM, CHR6,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g03505	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.02	OrthoFinder output from all 47 species
Dde_g09078	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g10042	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Ehy_g26944	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
GSVIVT01018218001	No alias	Chromatin organisation.chromatin remodeling...	0.03	OrthoFinder output from all 47 species
GSVIVT01018979001	CHR01, CHR1,...	ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
GSVIVT01035901001	PKL, GYM, CHR6,...	Chromatin organisation.chromatin remodeling...	0.04	OrthoFinder output from all 47 species
Gb_16888	CHR01, CHR1,...	ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Gb_39649	CHR17	chromatin remodeling factor (Iswi)	0.02	OrthoFinder output from all 47 species
Len_g01407	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.02	OrthoFinder output from all 47 species
Len_g14805	CHR5	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g27750	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g04407	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g12901	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g18340	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g39866	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g06697	No alias	chromatin remodeling factor *(ALC1) & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0023.g008742	No alias	not classified & original description: CDS=1-2037	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0168.g024260	CHR01, CHR1,...	not classified & original description: CDS=245-1573	0.02	OrthoFinder output from all 47 species
Sam_g14615	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g16204	No alias	SMARCA component *(SYD/BRM/MINU) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g17278	No alias	chromatin remodeling factor *(DDM1) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g29220	No alias	component *(CHR5) of SAGA transcription co-activator...	0.02	OrthoFinder output from all 47 species
Smo102849	ATCHR12	Chromatin organisation.chromatin remodeling...	0.02	OrthoFinder output from all 47 species
Smo440203	CHR11	Chromatin organisation.chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Solyc01g067390.4.1	CHR11, Solyc01g067390	chromatin remodeling factor (Iswi)	0.02	OrthoFinder output from all 47 species
Solyc02g062780.4.1	CHR01, CHR1,...	chromatin remodeling factor (DDM1)	0.04	OrthoFinder output from all 47 species
Solyc06g054560.3.1	CHR11, Solyc06g054560	chromatin remodeling factor (Iswi)	0.04	OrthoFinder output from all 47 species
Tin_g09616	No alias	chromaTin remodeling factor *(ALC1) & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g28925	PKR1, CHR4	CHD3-type chromaTin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Tin_g31900	CHR5	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e011541_P001	CHR01, CHR1,...	chromatin remodeling factor (DDM1)	0.04	OrthoFinder output from all 47 species
Zm00001e017643_P001	CHR17, Zm00001e017643	chromatin remodeling factor (Iswi)	0.06	OrthoFinder output from all 47 species
Zm00001e026331_P001	CHR17, Zm00001e026331	chromatin remodeling factor (Iswi)	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003682	chromatin binding	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0031491	nucleosome binding	IEA	Interproscan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0008608	attachment of spindle microtubules to kinetochore	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
CC	GO:0031262	Ndc80 complex	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051315	attachment of mitotic spindle microtubules to kinetochore	IEP	HCCA
BP	GO:1903047	mitotic cell cycle process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR015195	SLIDE	935	1045
IPR000330	SNF2_N	244	511
IPR015194	ISWI_HAND-dom	795	856
IPR001650	Helicase_C	534	646

External Links

No external refs found!

LOC_Os01g27040.1 (CHR17, LOC_Os01g27040)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation