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  5. LOC_Os01g21940.1

LOC_Os01g21940.1 (SMU1, LOC_Os01g21940)


Aliases : SMU1, LOC_Os01g21940

Description : Suppressor of mec-8 and unc-52 protein homolog 1 OS=Arabidopsis thaliana (sp|q8w117|smu1_arath : 906.0)


Gene families : OG0006796 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006796_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g21940.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00069p00133460 SMU1,... Suppressor of mec-8 and unc-52 protein homolog 1... 0.06 OrthoFinder output from all 47 species
Aop_g11172 SMU1 component *(SMU1) of SMU splicing factor complex &... 0.02 OrthoFinder output from all 47 species
Ceric.12G061400.1 SMU1, Ceric.12G061400 component *(SMU1) of SMU splicing factor complex &... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000863.17 SMU1 Suppressor of mec-8 and unc-52 protein homolog 1... 0.01 OrthoFinder output from all 47 species
Cre01.g020400 SMU1 Suppressor of mec-8 and unc-52 protein homolog 1... 0.03 OrthoFinder output from all 47 species
Dcu_g01516 SMU1 component *(SMU1) of SMU splicing factor complex &... 0.03 OrthoFinder output from all 47 species
GSVIVT01007685001 SMU1 Suppressor of mec-8 and unc-52 protein homolog 1... 0.06 OrthoFinder output from all 47 species
Gb_10805 SMU1 Suppressor of mec-8 and unc-52 protein homolog 1... 0.05 OrthoFinder output from all 47 species
Len_g02315 SMU1 component *(SMU1) of SMU splicing factor complex &... 0.02 OrthoFinder output from all 47 species
Mp4g04520.1 SMU1 Suppressor of mec-8 and unc-52 protein homolog 1... 0.07 OrthoFinder output from all 47 species
Sam_g18149 No alias component *(SMU1) of SMU splicing factor complex &... 0.03 OrthoFinder output from all 47 species
Smo409107 SMU1 Suppressor of mec-8 and unc-52 protein homolog 1... 0.04 OrthoFinder output from all 47 species
Solyc06g064830.3.1 SMU1, Solyc06g064830 Suppressor of mec-8 and unc-52 protein homolog 1... 0.07 OrthoFinder output from all 47 species
Zm00001e017539_P002 SMU1, Zm00001e017539 Suppressor of mec-8 and unc-52 protein homolog 1... 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0017150 tRNA dihydrouridine synthase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0106413 dihydrouridine synthase activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 344 381
IPR001680 WD40_repeat 300 337
IPR001680 WD40_repeat 221 246
IPR001680 WD40_repeat 267 295
No external refs found!