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  5. LOC_Os01g21630.1

LOC_Os01g21630.1 (LOC_Os01g21630)


Aliases : LOC_Os01g21630

Description : pectin acetylesterase


Gene families : OG0000637 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000637_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g21630.1
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AT2G46930 No alias Pectinacetylesterase family protein 0.03 OrthoFinder output from all 47 species
AT3G05910 No alias Pectinacetylesterase family protein 0.03 OrthoFinder output from all 47 species
AT3G09405 No alias Pectinacetylesterase family protein 0.02 OrthoFinder output from all 47 species
AT5G45280 No alias Pectinacetylesterase family protein 0.03 OrthoFinder output from all 47 species
GSVIVT01028231001 No alias Cell wall.pectin.modification and degradation.pectin... 0.03 OrthoFinder output from all 47 species
GSVIVT01036914001 No alias Cell wall.pectin.modification and degradation.pectin... 0.02 OrthoFinder output from all 47 species
LOC_Os01g66840.1 LOC_Os01g66840 pectin acetylesterase 0.04 OrthoFinder output from all 47 species
Lfl_g13795 No alias pectin acetylesterase *(PAE) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g15514 No alias pectin acetylesterase *(PAE) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g38305 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g43584 No alias pectin acetylesterase *(PAE) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e018996_P001 Zm00001e018996 pectin acetylesterase 0.03 OrthoFinder output from all 47 species
Zm00001e028575_P002 Zm00001e028575 pectin acetylesterase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016787 hydrolase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004963 PAE/NOTUM 53 400
No external refs found!