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  5. LOC_Os01g21180.1

LOC_Os01g21180.1 (LOC_Os01g21180)


Aliases : LOC_Os01g21180

Description : no hits & (original description: none)


Gene families : OG0006516 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006516_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g21180.1
Cluster HCCA: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
Adi_g007453 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g23029 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene10425.t1 Aspi01Gene10425 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g43031 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021123.28 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre03.g168605 No alias Solute transport.channels.CorA family.MRS/MGT metal... 0.02 OrthoFinder output from all 47 species
Cre50.g761397 No alias No description available 0.01 OrthoFinder output from all 47 species
Gb_14181 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp2g00100.1 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Nbi_g40699 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c25_690V3.1 Pp3c25_690 pseudouridine synthase and archaeosine transglycosylase... 0.01 OrthoFinder output from all 47 species
Solyc01g099890.3.1 Solyc01g099890 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Spa_g02942 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e026170_P003 Zm00001e026170 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR041366 Pre-PUA 8 88
IPR002478 PUA 93 170
No external refs found!