LOC_Os01g19800.1 (LOC_Os01g19800)

Aliases : LOC_Os01g19800

Description : RING-v-class E3 ligase

Gene families : OG0000370 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000370_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os01g19800.1
Cluster	HCCA: Cluster_102

Target	Alias	Description	ECC score	Gene Family Method
Adi_g023570	No alias	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Als_g46783	No alias	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g45666	No alias	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g23150	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0010011	auxin binding	IEP	HCCA
MF	GO:0042562	hormone binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011016	Znf_RING-CH	15	62
IPR022143	DUF3675	68	178

External Links

No external refs found!