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  5. LOC_Os01g16354.1

LOC_Os01g16354.1 (AthREP, REP, LOC_Os01g16354)


Aliases : AthREP, REP, LOC_Os01g16354

Description : accessory subunit of RAB-GTPase geranylgeranyltransferase (RGT) complex


Gene families : OG0004631 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004631_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g16354.1
Cluster HCCA: Cluster_150

Target Alias Description ECC score Gene Family Method Actions
Adi_g059332 AthREP, REP accessory component of RAB-GTPase... 0.03 OrthoFinder output from all 47 species
Ore_g29040 AthREP, REP accessory component of RAB-GTPase... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005092 GDP-dissociation inhibitor activity IEA Interproscan
BP GO:0007264 small GTPase mediated signal transduction IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
InterPro domains Description Start Stop
IPR018203 GDP_dissociation_inhibitor 23 71
IPR018203 GDP_dissociation_inhibitor 114 313
No external refs found!