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  5. LOC_Os01g15110.1

LOC_Os01g15110.1 (SYP21, ATSYP21,...)


Aliases : SYP21, ATSYP21, PEP12, ATPEP12, PEP12P, LOC_Os01g15110

Description : SYP2-group Qa-type SNARE component


Gene families : OG0001469 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001469_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g15110.1
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
Aop_g16776 VAM3, ATVAM3,... Qa-type SYP2-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species
Dac_g01332 SYP21, ATSYP21,... Qa-type SYP2-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species
Dde_g14899 VAM3, ATVAM3,... Qa-type SYP2-group component of SNARE membrane fusion... 0.05 OrthoFinder output from all 47 species
Ehy_g05572 VAM3, ATVAM3,... Qa-type SYP2-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species
Nbi_g04055 SYP21, ATSYP21,... Qa-type SYP2-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species
Ppi_g16259 SYP21, ATSYP21,... Qa-type SYP2-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015451 SYP21, ATSYP21,... Qa-type SYP2-group component of SNARE membrane fusion... 0.05 OrthoFinder output from all 47 species
Zm00001e017251_P001 VAM3, ATVAM3,... SYP2-group Qa-type SNARE component 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005096 GTPase activator activity IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006810 transport IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
CC GO:0070449 elongin complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR006011 Syntaxin_N 37 136
IPR000727 T_SNARE_dom 223 275
No external refs found!