LOC_Os01g13370.1 (LOC_Os01g13370)

Aliases : LOC_Os01g13370

Description : SINA-class E3 ligase

Gene families : OG0000462 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000462_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os01g13370.1
Cluster	HCCA: Cluster_47

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00021p00235650	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.1	OrthoFinder output from all 47 species
AMTR_s00029p00125110	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.09	OrthoFinder output from all 47 species
AMTR_s00048p00177540	SINAT2,...	Protein degradation.peptide tagging.Ubiquitin...	0.04	OrthoFinder output from all 47 species
AMTR_s00116p00101320	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
AT5G53360	No alias	TRAF-like superfamily protein	0.05	OrthoFinder output from all 47 species
Adi_g016618	SINAT2	E3 ubiquitin ligase *(SINA) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g020944	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g110024	SINAT2	E3 ubiquitin ligase *(SINA) & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g11233	No alias	E3 ubiquitin ligase *(SINA) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g02052	No alias	E3 ubiquitin ligase *(SINA) & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g14914	No alias	E3 ubiquitin ligase *(SINA) & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g03618	No alias	E3 ubiquitin ligase *(SINA) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01025381001	SINAT2	Protein degradation.peptide tagging.Ubiquitin...	0.05	OrthoFinder output from all 47 species
GSVIVT01027153001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
LOC_Os01g03300.1	LOC_Os01g03300	no hits & (original description: none)	0.01	OrthoFinder output from all 47 species
MA_9566834g0010	No alias	SINA-class E3 ligase	0.02	OrthoFinder output from all 47 species
Mp3g21220.1	SINAT2	SINA-class E3 ligase	0.03	OrthoFinder output from all 47 species
Msp_g00426	No alias	E3 ubiquitin ligase *(SINA) & original description: none	0.04	OrthoFinder output from all 47 species
Msp_g07070	No alias	E3 ubiquitin ligase *(SINA) & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g06389	No alias	E3 ubiquitin ligase *(SINA) & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g23915	SINAT2	E3 ubiquitin ligase *(SINA) & original description: none	0.02	OrthoFinder output from all 47 species
Solyc01g006190.3.1	SINAT2, Solyc01g006190	SINA-class E3 ligase	0.02	OrthoFinder output from all 47 species
Solyc06g051980.4.1	Solyc06g051980	SINA-class E3 ligase	0.02	OrthoFinder output from all 47 species
Zm00001e016376_P001	Zm00001e016376	SINA-class E3 ligase	0.14	OrthoFinder output from all 47 species
Zm00001e027144_P001	Zm00001e027144	SINA-class E3 ligase	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007275	multicellular organism development	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0018995	host cellular component	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0033643	host cell part	None	Extended
CC	GO:0033646	host intracellular part	None	Extended
CC	GO:0033647	host intracellular organelle	None	Extended
CC	GO:0033648	host intracellular membrane-bounded organelle	None	Extended
CC	GO:0042025	host cell nucleus	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
BP	GO:0016567	protein ubiquitination	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0016835	carbon-oxygen lyase activity	IEP	HCCA
MF	GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	IEP	HCCA
MF	GO:0030570	pectate lyase activity	IEP	HCCA
MF	GO:0030599	pectinesterase activity	IEP	HCCA
BP	GO:0032446	protein modification by small protein conjugation	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR018121	7-in-absentia-prot_TRAF-dom	128	327

External Links

No external refs found!

LOC_Os01g13370.1 (LOC_Os01g13370)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation