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  5. LOC_Os01g13320.1

LOC_Os01g13320.1 (LOC_Os01g13320)


Aliases : LOC_Os01g13320

Description : pectin methylesterase


Gene families : OG0000147 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000147_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g13320.1
Cluster HCCA: Cluster_171

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00230630 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
AMTR_s00003p00238240 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
AMTR_s00003p00239700 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.04 OrthoFinder output from all 47 species
AMTR_s00007p00101250 ATPMEPCRA,... Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
AMTR_s00021p00242180 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.04 OrthoFinder output from all 47 species
AMTR_s00040p00188020 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
AMTR_s00129p00028250 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
AMTR_s00129p00033080 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
AMTR_s00129p00036660 evm_27.TU.AmTr_v1... Probable pectinesterase/pectinesterase inhibitor 12... 0.02 OrthoFinder output from all 47 species
AT2G47550 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 OrthoFinder output from all 47 species
AT3G14310 ATPME3, PME3 pectin methylesterase 3 0.03 OrthoFinder output from all 47 species
AT3G43270 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 OrthoFinder output from all 47 species
AT3G47400 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 OrthoFinder output from all 47 species
AT3G49220 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 OrthoFinder output from all 47 species
Adi_g009732 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Aev_g06111 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Ala_g26378 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07772 No alias EC_3.1 hydrolase acting on ester bond & original... 0.05 OrthoFinder output from all 47 species
Aop_g11322 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Aop_g36473 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene05823.t1 Aspi01Gene05823 EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene07382.t1 Aspi01Gene07382 EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene07383.t1 ATPMEPCRF,... EC_3.1 hydrolase acting on ester bond & original... 0.06 OrthoFinder output from all 47 species
Aspi01Gene07398.t1 ATPMEPCRF,... EC_3.1 hydrolase acting on ester bond & original... 0.06 OrthoFinder output from all 47 species
Aspi01Gene10964.t1 Aspi01Gene10964 EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene11209.t1 Aspi01Gene11209 EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene38648.t1 Aspi01Gene38648 EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0092.g043013 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0145.g051666 ATPMEPCRB EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Ceric.16G076000.1 PME44, ATPME44,... EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Dde_g48560 ATPME2, PME2 EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Ehy_g08496 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Ehy_g09155 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Ehy_g19170 ATPMEPCRF, PMEPCRF EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Ehy_g27713 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01015000001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
GSVIVT01016667001 PME1, ATPME1 Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
GSVIVT01017687001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 OrthoFinder output from all 47 species
GSVIVT01026518001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 OrthoFinder output from all 47 species
GSVIVT01027359001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.06 OrthoFinder output from all 47 species
GSVIVT01027652001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
GSVIVT01027653001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
GSVIVT01028265001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 OrthoFinder output from all 47 species
GSVIVT01031165001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 OrthoFinder output from all 47 species
GSVIVT01035108001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 OrthoFinder output from all 47 species
GSVIVT01037349001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
GSVIVT01037352001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 OrthoFinder output from all 47 species
Gb_03174 ATPME3, PME3 pectin methylesterase 0.05 OrthoFinder output from all 47 species
Gb_18512 ATPME3, PME3 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Gb_24214 No alias pectin methylesterase 0.04 OrthoFinder output from all 47 species
Gb_28387 ATPME3, PME3 pectin methylesterase 0.04 OrthoFinder output from all 47 species
LOC_Os01g65790.1 LOC_Os01g65790 pectin methylesterase 0.04 OrthoFinder output from all 47 species
LOC_Os03g18860.1 LOC_Os03g18860 pectin methylesterase 0.03 OrthoFinder output from all 47 species
LOC_Os09g26360.1 LOC_Os09g26360 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Len_g11697 No alias EC_3.1 hydrolase acting on ester bond & original... 0.07 OrthoFinder output from all 47 species
Len_g17131 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
MA_10435891g0010 PME61 pectin methylesterase 0.03 OrthoFinder output from all 47 species
MA_158002g0020 ATPMEPCRF, PMEPCRF pectin methylesterase 0.02 OrthoFinder output from all 47 species
MA_18093g0010 ATPMEPCRA, PMEPCRA Pectinesterase 2.1 OS=Solanum lycopersicum... 0.02 OrthoFinder output from all 47 species
MA_354248g0010 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
MA_436039g0010 ATPME2, PME2 pectin methylesterase 0.04 OrthoFinder output from all 47 species
MA_648837g0010 ATPMEPCRF, PMEPCRF pectin methylesterase 0.03 OrthoFinder output from all 47 species
MA_8928694g0010 No alias Probable pectinesterase/pectinesterase inhibitor 32... 0.02 OrthoFinder output from all 47 species
Nbi_g01365 PME44, ATPME44 EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Nbi_g08831 ATPME2, PME2 EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Nbi_g13298 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Nbi_g19794 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Ore_g20165 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Ore_g22612 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Ore_g32251 ATPME2, PME2 EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Pp3c8_3840V3.1 Pp3c8_3840 Plant invertase/pectin methylesterase inhibitor superfamily 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g000947 No alias not classified & original description: CDS=1-831 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0047.g013432 No alias EC_3.1 hydrolase acting on ester bond & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0119.g021277 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0165.g024099 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Sam_g24349 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Solyc03g083840.3.1 Solyc03g083840 pectin methylesterase 0.02 OrthoFinder output from all 47 species
Solyc06g034360.2.1 Solyc06g034360 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Solyc07g017600.3.1 PME44, ATPME44,... pectin methylesterase 0.03 OrthoFinder output from all 47 species
Solyc09g075330.4.1 Solyc09g075330 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Solyc11g005770.2.1 Solyc11g005770 pectin methylesterase 0.04 OrthoFinder output from all 47 species
Spa_g01966 ATPME2, PME2 EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Spa_g06048 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Spa_g18353 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Zm00001e009863_P001 Zm00001e009863 pectin methylesterase 0.02 OrthoFinder output from all 47 species
Zm00001e017514_P001 ATPMEPCRB, Zm00001e017514 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Zm00001e017515_P001 ATPME2, PME2,... pectin methylesterase 0.03 OrthoFinder output from all 47 species
Zm00001e026790_P001 ATPMEPCRB, Zm00001e026790 pectin methylesterase 0.02 OrthoFinder output from all 47 species
Zm00001e035838_P001 Zm00001e035838 pectin methylesterase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEA Interproscan
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 303 604
IPR006501 Pectinesterase_inhib_dom 75 244
No external refs found!