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  5. LOC_Os01g13140.1

LOC_Os01g13140.1 (LOC_Os01g13140)


Aliases : LOC_Os01g13140

Description : Protein JINGUBANG OS=Arabidopsis thaliana (sp|o48716|jgb_arath : 198.0)


Gene families : OG0000309 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000309_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g13140.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00256130 evm_27.TU.AmTr_v1... Protein JINGUBANG OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00049p00123610 evm_27.TU.AmTr_v1... Protein JINGUBANG OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00053p00162370 evm_27.TU.AmTr_v1... Protein JINGUBANG OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00109p00135240 evm_27.TU.AmTr_v1... Protein JINGUBANG OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00156p00066850 evm_27.TU.AmTr_v1... Protein JINGUBANG OS=Arabidopsis thaliana 0.09 OrthoFinder output from all 47 species
Aev_g00841 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g22068 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g09174 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g22044 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene21045.t1 Aspi01Gene21045 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene23387.t1 Aspi01Gene23387 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene44877.t1 Aspi01Gene44877 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene45295.t1 Aspi01Gene45295 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene45302.t1 Aspi01Gene45302 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene60159.t1 Aspi01Gene60159 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene72932.t1 Aspi01Gene72932 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene72933.t1 Aspi01Gene72933 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.15G069400.1 Ceric.15G069400 not classified & original description: pacid=50639526... 0.04 OrthoFinder output from all 47 species
Ceric.28G012400.1 Ceric.28G012400 not classified & original description: pacid=50570345... 0.03 OrthoFinder output from all 47 species
Dac_g07418 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g11331 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g35395 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g05808 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g14895 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01007589001 No alias Protein JINGUBANG OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01007825001 No alias No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01035639001 No alias Protein JINGUBANG OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_26403 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_26404 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_10431396g0020 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_107471g0010 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_28858g0010 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
MA_370291g0010 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Msp_g34011 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g46507 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16677 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g35419 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g30709 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g25659 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g08501 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g60508 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Solyc01g068250.2.1 Solyc01g068250 Protein JINGUBANG OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Solyc01g109120.3.1 Solyc01g109120 Protein JINGUBANG OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Solyc05g006340.3.1 Solyc05g006340 Protein JINGUBANG OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Solyc12g044320.2.1 Solyc12g044320 Protein JINGUBANG OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Solyc12g088980.2.1 Solyc12g088980 Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Tin_g17869 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e003105_P001 Zm00001e003105 Protein JINGUBANG OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e005608_P001 Zm00001e005608 Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e007790_P001 Zm00001e007790 Protein JINGUBANG OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 440 483
IPR001680 WD40_repeat 292 328
IPR001680 WD40_repeat 397 428
No external refs found!