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  5. LOC_Os01g12930.1

LOC_Os01g12930.1 (LOC_Os01g12930)


Aliases : LOC_Os01g12930

Description : ubiquitin E3 ligase (CERBERUS/LIN)


Gene families : OG0002525 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002525_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g12930.1
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
Ala_g02707 No alias ubiquitin E3 ligase *(CERBERUS/LIN) & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01009918001 PUB8, B80 External stimuli response.biotic... 0.03 OrthoFinder output from all 47 species
Gb_32192 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.03 OrthoFinder output from all 47 species
Gb_32193 PUB26 Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus... 0.03 OrthoFinder output from all 47 species
LOC_Os04g49500.1 LOC_Os04g49500 Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus... 0.01 OrthoFinder output from all 47 species
Len_g45207 PUB26 ubiquitin E3 ligase *(CERBERUS/LIN) & original description: none 0.02 OrthoFinder output from all 47 species
MA_1171557g0010 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.04 OrthoFinder output from all 47 species
MA_15009g0010 PUB26 Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus... 0.05 OrthoFinder output from all 47 species
Mp2g17510.1 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.03 OrthoFinder output from all 47 species
Msp_g15480 No alias ubiquitin E3 ligase *(CERBERUS/LIN) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g05045 No alias ubiquitin E3 ligase *(CERBERUS/LIN) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g32668 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g40012 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g33588 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 425 495
IPR001680 WD40_repeat 1106 1132
IPR001680 WD40_repeat 1142 1176
No external refs found!