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  5. LOC_Os01g11900.1

LOC_Os01g11900.1 (DME, LOC_Os01g11900)


Aliases : DME, LOC_Os01g11900

Description : methylcytosine-specific DNA glycosylase (ROS1). bifunctional DNA glycosylase/lyase (ROS1)


Gene families : OG0001282 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001282_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g11900.1

Target Alias Description ECC score Gene Family Method Actions
AT5G04560 DME HhH-GPD base excision DNA repair family protein 0.03 OrthoFinder output from all 47 species
Aspi01Gene54612.t1 DML1, ROS1,... methylcytosine-specific DNA glycosylase *(ROS1) &... 0.02 OrthoFinder output from all 47 species
GSVIVT01033777001 DML1, ROS1 DNA damage response.DNA repair mechanisms.base excision... 0.03 OrthoFinder output from all 47 species
GSVIVT01034713001 DME DNA damage response.DNA repair mechanisms.base excision... 0.05 OrthoFinder output from all 47 species
Msp_g20128 DML1, ROS1 methylcytosine-specific DNA glycosylase *(ROS1) &... 0.03 OrthoFinder output from all 47 species
Zm00001e014575_P001 DML1, ROS1,... methylcytosine-specific DNA glycosylase (ROS1).... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR028925 RRM_DME 1831 1931
IPR028924 Perm-CXXC 1797 1828
No external refs found!