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  5. LOC_Os01g09990.1

LOC_Os01g09990.1 (LOC_Os01g09990)


Aliases : LOC_Os01g09990

Description : transcription factor (bHLH)


Gene families : OG0011158 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0011158_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g09990.1
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00064p00208400 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.08 OrthoFinder output from all 47 species
AT5G56960 No alias basic helix-loop-helix (bHLH) DNA-binding family protein 0.06 OrthoFinder output from all 47 species
GSVIVT01015189001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
Gb_15442 No alias transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
LOC_Os01g09900.1 LOC_Os01g09900 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
LOC_Os01g39330.1 LOC_Os01g39330 transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
LOC_Os05g11070.1 LOC_Os05g11070 transcription factor (bHLH) 0.07 OrthoFinder output from all 47 species
Solyc07g039570.3.1 Solyc07g039570 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e016554_P001 Zm00001e016554 transcription factor (bHLH) 0.1 OrthoFinder output from all 47 species
Zm00001e020505_P001 Zm00001e020505 transcription factor (bHLH) 0.11 OrthoFinder output from all 47 species
Zm00001e025985_P001 Zm00001e025985 transcription factor (bHLH) 0.13 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006952 defense response IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 254 300
No external refs found!