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  5. LOC_Os01g64700.2

LOC_Os01g64700.2


Description : transcription factor (TUB)


Gene families : OG_01_0000335 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000335_tree ,
OG_02_0000295 (LandPlants) Phylogenetic Tree(s): OG_02_0000295_tree ,
OG_03_0000341 (SeedPlants) Phylogenetic Tree(s): OG_03_0000341_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g64700.2
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00238180 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.02 Archaeplastida
AMTR_s00040p00040910 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.02 Archaeplastida
Cpa|evm.model.tig00020603.38 No alias RNA biosynthesis.transcriptional activation.TUB... 0.03 Archaeplastida
GSVIVT01014191001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.03 Archaeplastida
GSVIVT01017810001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.03 Archaeplastida
GSVIVT01029701001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.06 Archaeplastida
GSVIVT01034528001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.02 Archaeplastida
LOC_Os05g48670.1 No alias transcription factor (TUB) 0.06 Archaeplastida
MA_18086g0010 No alias transcription factor (TUB) 0.02 Archaeplastida
Mp6g01640.1 No alias transcription factor (TUB) 0.03 Archaeplastida
Pp3c8_18450V3.1 No alias tubby like protein 3 0.02 Archaeplastida
Smo83983 No alias RNA biosynthesis.transcriptional activation.TUB... 0.02 Archaeplastida
Smo85745 No alias RNA biosynthesis.transcriptional activation.TUB... 0.02 Archaeplastida
Solyc01g067680.3.1 No alias transcription factor (TUB) 0.02 Archaeplastida
Solyc01g104670.3.1 No alias transcription factor (TUB) 0.05 Archaeplastida
Solyc04g071750.4.1 No alias transcription factor (TUB) 0.03 Archaeplastida
Solyc10g046970.2.1 No alias transcription factor (TUB) 0.04 Archaeplastida
Zm00001e019166_P001 No alias transcription factor (TUB) 0.05 Archaeplastida
Zm00001e024284_P002 No alias transcription factor (TUB) 0.04 Archaeplastida
Zm00001e024653_P002 No alias transcription factor (TUB) 0.04 Archaeplastida
Zm00001e037073_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
AMTR_s00011p00238180 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.02 LandPlants
AMTR_s00040p00040910 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.01 LandPlants
GSVIVT01014191001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.01 LandPlants
Mp6g01640.1 No alias transcription factor (TUB) 0.03 LandPlants
Solyc01g104670.3.1 No alias transcription factor (TUB) 0.05 LandPlants
Solyc10g046970.2.1 No alias transcription factor (TUB) 0.03 LandPlants
Zm00001e019166_P001 No alias transcription factor (TUB) 0.04 LandPlants
Zm00001e024284_P002 No alias transcription factor (TUB) 0.04 LandPlants
AMTR_s00011p00238180 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.02 SeedPlants
AMTR_s00040p00040910 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.01 SeedPlants
Solyc01g104670.3.1 No alias transcription factor (TUB) 0.05 SeedPlants
Solyc02g085130.4.1 No alias transcription factor (TUB) 0.01 SeedPlants
Solyc10g046970.2.1 No alias transcription factor (TUB) 0.02 SeedPlants
Zm00001e019166_P001 No alias transcription factor (TUB) 0.04 SeedPlants
Zm00001e024284_P002 No alias transcription factor (TUB) 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001810 F-box_dom 58 111
IPR000007 Tubby_C 122 443
No external refs found!