Aliases : MSH7, ATMSH7, MSH6-2, LOC_Os01g08540
Description : component MSH7 of MSH2-x mismatch repair heterodimers
Gene families : OG0001663 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001663_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00003p00029910 | MSH6-1, ATMSH6,... | DNA damage response.DNA repair mechanisms.mismatch... | 0.04 | OrthoFinder output from all 47 species | |
AMTR_s00006p00242090 | MSH7, ATMSH7,... | DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana | 0.09 | OrthoFinder output from all 47 species | |
AMTR_s00078p00191830 | MSH7, ATMSH7,... | DNA damage response.DNA repair mechanisms.mismatch... | 0.08 | OrthoFinder output from all 47 species | |
AT3G24495 | MSH7, ATMSH7, MSH6-2 | MUTS homolog 7 | 0.05 | OrthoFinder output from all 47 species | |
Azfi_s0015.g014037 | MSH7, ATMSH7, MSH6-2 | component *(MSH7) of MSH2-x mismatch repair heterodimers... | 0.07 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000489.16 | MSH6-1, ATMSH6, MSH6 | DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
Cre05.g235750 | MSH6-1, ATMSH6, MSH6 | DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana | 0.06 | OrthoFinder output from all 47 species | |
Dac_g23796 | MSH7, ATMSH7, MSH6-2 | component *(MSH7) of MSH2-x mismatch repair heterodimers... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01015407001 | MSH7, ATMSH7, MSH6-2 | DNA damage response.DNA repair mechanisms.mismatch... | 0.09 | OrthoFinder output from all 47 species | |
Gb_18995 | MSH7, ATMSH7, MSH6-2 | DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana... | 0.04 | OrthoFinder output from all 47 species | |
Gb_18996 | MSH7, ATMSH7, MSH6-2 | DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana... | 0.02 | OrthoFinder output from all 47 species | |
MA_10429110g0010 | MSH6-1, ATMSH6, MSH6 | component MSH6 of MSH2-x mismatch repair heterodimers | 0.03 | OrthoFinder output from all 47 species | |
MA_214705g0010 | MSH7, ATMSH7, MSH6-2 | DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana... | 0.05 | OrthoFinder output from all 47 species | |
MA_248700g0010 | MSH7, ATMSH7, MSH6-2 | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
MA_41124g0010 | MSH6-1, ATMSH6, MSH6 | DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
Mp2g14640.1 | MSH6-1, ATMSH6, MSH6 | component MSH6 of MSH2-x mismatch repair heterodimers | 0.03 | OrthoFinder output from all 47 species | |
Mp7g16850.1 | MSH7, ATMSH7, MSH6-2 | component MSH7 of MSH2-x mismatch repair heterodimers | 0.1 | OrthoFinder output from all 47 species | |
Nbi_g08811 | MSH7, ATMSH7, MSH6-2 | component *(MSH7) of MSH2-x mismatch repair heterodimers... | 0.02 | OrthoFinder output from all 47 species | |
Solyc01g079520.3.1 | MSH6-1, ATMSH6,... | component MSH6 of MSH2-x mismatch repair heterodimers | 0.09 | OrthoFinder output from all 47 species | |
Zm00001e016678_P004 | MSH7, ATMSH7,... | component MSH7 of MSH2-x mismatch repair heterodimers | 0.07 | OrthoFinder output from all 47 species | |
Zm00001e034087_P001 | MSH6-1, ATMSH6,... | component MSH6 of MSH2-x mismatch repair heterodimers | 0.1 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005524 | ATP binding | IEA | Interproscan |
BP | GO:0006298 | mismatch repair | IEA | Interproscan |
MF | GO:0030983 | mismatched DNA binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003678 | DNA helicase activity | IEP | HCCA |
MF | GO:0003824 | catalytic activity | IEP | HCCA |
MF | GO:0003887 | DNA-directed DNA polymerase activity | IEP | HCCA |
MF | GO:0004386 | helicase activity | IEP | HCCA |
MF | GO:0004518 | nuclease activity | IEP | HCCA |
MF | GO:0004527 | exonuclease activity | IEP | HCCA |
CC | GO:0005634 | nucleus | IEP | HCCA |
BP | GO:0006260 | DNA replication | IEP | HCCA |
BP | GO:0006270 | DNA replication initiation | IEP | HCCA |
BP | GO:0006302 | double-strand break repair | IEP | HCCA |
BP | GO:0006303 | double-strand break repair via nonhomologous end joining | IEP | HCCA |
BP | GO:0006479 | protein methylation | IEP | HCCA |
MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
MF | GO:0008170 | N-methyltransferase activity | IEP | HCCA |
BP | GO:0008213 | protein alkylation | IEP | HCCA |
MF | GO:0008270 | zinc ion binding | IEP | HCCA |
MF | GO:0008276 | protein methyltransferase activity | IEP | HCCA |
MF | GO:0008408 | 3'-5' exonuclease activity | IEP | HCCA |
MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | HCCA |
MF | GO:0016278 | lysine N-methyltransferase activity | IEP | HCCA |
MF | GO:0016279 | protein-lysine N-methyltransferase activity | IEP | HCCA |
BP | GO:0016570 | histone modification | IEP | HCCA |
BP | GO:0016571 | histone methylation | IEP | HCCA |
BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
MF | GO:0016740 | transferase activity | IEP | HCCA |
MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | HCCA |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
MF | GO:0016787 | hydrolase activity | IEP | HCCA |
MF | GO:0016788 | hydrolase activity, acting on ester bonds | IEP | HCCA |
BP | GO:0018022 | peptidyl-lysine methylation | IEP | HCCA |
MF | GO:0018024 | histone lysine N-methyltransferase activity | IEP | HCCA |
BP | GO:0018193 | peptidyl-amino acid modification | IEP | HCCA |
BP | GO:0018205 | peptidyl-lysine modification | IEP | HCCA |
CC | GO:0030915 | Smc5-Smc6 complex | IEP | HCCA |
BP | GO:0032259 | methylation | IEP | HCCA |
MF | GO:0034061 | DNA polymerase activity | IEP | HCCA |
BP | GO:0034968 | histone lysine methylation | IEP | HCCA |
BP | GO:0036211 | protein modification process | IEP | HCCA |
MF | GO:0042054 | histone methyltransferase activity | IEP | HCCA |
CC | GO:0043226 | organelle | IEP | HCCA |
CC | GO:0043227 | membrane-bounded organelle | IEP | HCCA |
CC | GO:0043229 | intracellular organelle | IEP | HCCA |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | HCCA |
BP | GO:0043412 | macromolecule modification | IEP | HCCA |
BP | GO:0043414 | macromolecule methylation | IEP | HCCA |
BP | GO:0070646 | protein modification by small protein removal | IEP | HCCA |
CC | GO:0106068 | SUMO ligase complex | IEP | HCCA |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
CC | GO:1990234 | transferase complex | IEP | HCCA |
No external refs found! |