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  5. LOC_Os01g08400.1

LOC_Os01g08400.1 (SYP32, ATSYP32, LOC_Os01g08400)


Aliases : SYP32, ATSYP32, LOC_Os01g08400

Description : SYP3-group Qa-type SNARE component


Gene families : OG0002044 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002044_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g08400.1
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
AT5G05760 ATSED5, SED5,... syntaxin of plants 31 0.03 OrthoFinder output from all 47 species
Adi_g082702 SYP32, ATSYP32 Qa-type SYP3-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species
Cba_g58182 SYP32, ATSYP32 Qa-type SYP3-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000073.39 SYP32, ATSYP32 Vesicle trafficking.SNARE target membrane recognition... 0.01 OrthoFinder output from all 47 species
Dcu_g08692 SYP32, ATSYP32 Qa-type SYP3-group component of SNARE membrane fusion... 0.04 OrthoFinder output from all 47 species
Dde_g15228 SYP32, ATSYP32 Qa-type SYP3-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species
Ehy_g06698 SYP32, ATSYP32 Qa-type SYP3-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species
GSVIVT01015436001 SYP32, ATSYP32 Vesicle trafficking.SNARE target membrane recognition... 0.02 OrthoFinder output from all 47 species
GSVIVT01032856001 ATSED5, SED5,... Vesicle trafficking.SNARE target membrane recognition... 0.03 OrthoFinder output from all 47 species
Mp1g08030.1 SYP32, ATSYP32 SYP3-group Qa-type SNARE component 0.04 OrthoFinder output from all 47 species
Msp_g02410 SYP32, ATSYP32 Qa-type SYP3-group component of SNARE membrane fusion... 0.04 OrthoFinder output from all 47 species
Nbi_g03561 SYP32, ATSYP32 Qa-type SYP3-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species
Pir_g14426 ATSED5, SED5,... Qa-type SYP3-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0103.g020020 SYP32, ATSYP32 Qa-type SYP3-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species
Sam_g07746 No alias Qa-type SYP3-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species
Zm00001e016695_P001 SYP32, ATSYP32,... SYP3-group Qa-type SNARE component 0.07 OrthoFinder output from all 47 species
Zm00001e025913_P001 SYP32, ATSYP32,... SYP3-group Qa-type SNARE component 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP HCCA
BP GO:0006810 transport IEP HCCA
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP HCCA
BP GO:0015780 nucleotide-sugar transmembrane transport IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:1901264 carbohydrate derivative transport IEP HCCA
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR021538 Syntaxin-5_N 6 26
IPR000727 T_SNARE_dom 289 340
No external refs found!