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  5. LOC_Os01g08190.1

LOC_Os01g08190.1 (LUG, RON2, LOC_Os01g08190)


Aliases : LUG, RON2, LOC_Os01g08190

Description : transcriptional co-repressor (LUG)


Gene families : OG0000790 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000790_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g08190.1
Cluster HCCA: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00252820 LUG, RON2,... RNA biosynthesis.transcriptional repression.LUG... 0.03 OrthoFinder output from all 47 species
Adi_g005294 LUG, RON2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0074.g037523 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.03 OrthoFinder output from all 47 species
Ceric.35G054400.1 LUG, RON2,... component *(LUG/LUH) of transcriptional co-repressor... 0.02 OrthoFinder output from all 47 species
Gb_10347 LUG, RON2 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp1g15050.1 LUG, RON2 transcriptional co-repressor (LUG) 0.02 OrthoFinder output from all 47 species
Ore_g34897 LUH component *(LUG/LUH) of transcriptional co-repressor... 0.02 OrthoFinder output from all 47 species
Pnu_g18168 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.02 OrthoFinder output from all 47 species
Sam_g13678 No alias component *(LUG/LUH) of transcriptional co-repressor... 0.03 OrthoFinder output from all 47 species
Sam_g39728 No alias component *(LUG/LUH) of transcriptional co-repressor... 0.02 OrthoFinder output from all 47 species
Solyc05g026470.2.1 LUH, Solyc05g026470 Transcriptional corepressor LEUNIG OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc05g026480.2.1 LUG, RON2, Solyc05g026480 transcriptional co-repressor (LUG) 0.04 OrthoFinder output from all 47 species
Solyc06g065640.3.1 LUG, RON2, Solyc06g065640 transcriptional co-repressor (LUG) 0.03 OrthoFinder output from all 47 species
Zm00001e016200_P001 LUH, Zm00001e016200 transcriptional co-repressor (LUG) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043138 3'-5' DNA helicase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 843 877
IPR001680 WD40_repeat 756 792
IPR001680 WD40_repeat 675 712
IPR001680 WD40_repeat 597 625
IPR001680 WD40_repeat 634 668
IPR006594 LisH 15 41
No external refs found!