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  5. LOC_Os01g07110.1

LOC_Os01g07110.1 (BRCA2(V), BRCA2B,...)


Aliases : BRCA2(V), BRCA2B, ATBRCA2(V), LOC_Os01g07110

Description : DMC1-recombinase recruitment protein (BRCA2). component BRCA2 of BRCC DNA-damage response complex


Gene families : OG0007523 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007523_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g07110.1
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00030650 BRCA2(V),... DNA damage response.BRCC DNA-damage response... 0.11 OrthoFinder output from all 47 species
AT4G00020 EDA20,... BREAST CANCER 2 like 2A 0.08 OrthoFinder output from all 47 species
AT5G01630 BRCA2(V),... BRCA2-like B 0.05 OrthoFinder output from all 47 species
Azfi_s0238.g059627 BRCA2(V),... component *(BRCA2) of regulatory BRCC deubiquination... 0.04 OrthoFinder output from all 47 species
Cba_g14963 BRCA2(V),... component *(BRCA2) of regulatory BRCC deubiquination... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000769.41 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre13.g566900 No alias DNA damage response.BRCC DNA-damage response... 0.03 OrthoFinder output from all 47 species
GSVIVT01030280001 BRCA2(V),... DNA damage response.BRCC DNA-damage response... 0.08 OrthoFinder output from all 47 species
Gb_10450 BRCA2(V),... DMC1-recombinase recruitment protein (BRCA2) 0.08 OrthoFinder output from all 47 species
MA_10148084g0010 BRCA2(V),... DMC1-recombinase recruitment protein (BRCA2). component... 0.02 OrthoFinder output from all 47 species
MA_91494g0010 BRCA2(V),... DMC1-recombinase recruitment protein (BRCA2) 0.04 OrthoFinder output from all 47 species
Solyc02g050200.2.1 BRCA2(V),... DMC1-recombinase recruitment protein (BRCA2). component... 0.06 OrthoFinder output from all 47 species
Solyc02g050210.2.1 BRCA2(V),... DMC1-recombinase recruitment protein (BRCA2). component... 0.02 OrthoFinder output from all 47 species
Tin_g11489 BRCA2(V),... component *(BRCA2) of regulatory BRCC deubiquination... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000724 double-strand break repair via homologous recombination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
CC GO:0000775 chromosome, centromeric region IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0098687 chromosomal region IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR015252 BRCA2_hlx 920 995
IPR015187 BRCA2_OB_1 999 1138
IPR002093 BRCA2_repeat 168 191
IPR002093 BRCA2_repeat 321 347
IPR002093 BRCA2_repeat 691 719
IPR002093 BRCA2_repeat 407 430
IPR002093 BRCA2_repeat 534 563
IPR002093 BRCA2_repeat 249 275
No external refs found!